Gene Information

Name : Desac_0330 (Desac_0330)
Accession : YP_004369402.1
Strain : Desulfobacca acetoxidans DSM 11109
Genome accession: NC_015388
Putative virulence/resistance : Virulence
Product : Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 404157 - 405524 bp
Length : 1368 bp
Strand : +
Note : COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR003593:IPR002078:IPR002197; KEGG: dak:DaAHT2_1070 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: R

DNA sequence : 
ATGGACACAATCTTAGTTGTTGACGACGAAAAAAATTACCTGTTGGTCATGGAGACCCTGTTGGCCGGAGCCGGATATGA
AGTCTTCACCGCTGACAGCGGCGAGACTGCCCTGGAACTGACCCGGCGCAATGACCTGGATTTAGTCGTTACTGATATGA
AGATGCCCCGCATGAGCGGTATTGAGCTTCTCGAACAGCTCAAGCAGGTATATCCCGACCTGCCCGTCATCATGATGACC
GCCTATGGCACCGTCGAAAAGGCGGTGGAGGCCATGAAGAAGGGCGCATTTGATTACATCTTGAAACCTTTTAAGAACGA
AGAGATCTTATTAACCATCGCCAAGGCCCTGGAGCTGCGCCACCTCTTAACGGAAAACCGCCGACTCCGACACGATCTGG
AGCAACGCCATCGTTTTGATAATATTGTGGGCAACAGTAAGGCCATGCAGAGTATCTTTGCGGTGGTGGAAAAAGTAGCC
CAGACCCGGGCCACGGTGCTTATTTCCGGGGAGAGCGGTACCGGCAAAGAACTGATCGCCCGGGCCATCCATCACCGCAG
TCCGAGGAATCAGGGTCCCTTTATCTCCGTCAACTGCGGAGCATTGACGGAAACCCTGCTCGAGAGCGAACTCTTCGGCC
ATGAAAAAGGAGCCTTCACCCATGCCGTAGCTATGCGTAAAGGCCGCTTCGAGCTGGCCGAAGGCGGCACCCTTTTCTTG
GATGAAGTTGCTGAAATGTCTCCTGGTTTGCAGGTGAAACTGCTGCGCGTGCTGCAGGAGATGGAGTTCGAACGGGTAGG
CGGCAGCCGCACCATCCGGGTTGATGTCAGGGTCGTGGCGGCCTCCAACCGCGACCTGAAGACCGAAGTGGGAGCAGGTA
ATTTTCGGGAAGACCTCTTTTATCGGCTTAATGTCGTCCACCTGGCCATTCCACCTCTGCGCCAGCGCACCGATGATATT
CCGCTTCTCGTGACACATTTCATGCAAAAATTTGCCCGGGTAAACAACAGAGGCGATATCCGGCTGGACCCCGAAGTAAT
GAAGATCCTGTTGCGCTATCCTTGGCCAGGAAACGTCCGGGAATTGGAAAATGTGATAGAGCGGGCTGTGATTCTTTGCA
GCGGCGATACCATCACTATTGCAGATTTGCCCCCCAACGTCGCCGAAGCCCCGGAAACCGAGTTTAATATTGACCTGTTA
GTGCCCCAGCACATTCCTCTTCCTGAAGCTCTTGATACAATTGAACAATTAATGATCCGGCGAGCTCTCAACCAGTCCGG
CTACGTGCAGGTGCGGGCGGCGGAGTTATTGGGCATTACAAAAAGCCTCCTGCAGTACAAGTTGAAAAAATACCAGATAA
CCAATTGA

Protein sequence : 
MDTILVVDDEKNYLLVMETLLAGAGYEVFTADSGETALELTRRNDLDLVVTDMKMPRMSGIELLEQLKQVYPDLPVIMMT
AYGTVEKAVEAMKKGAFDYILKPFKNEEILLTIAKALELRHLLTENRRLRHDLEQRHRFDNIVGNSKAMQSIFAVVEKVA
QTRATVLISGESGTGKELIARAIHHRSPRNQGPFISVNCGALTETLLESELFGHEKGAFTHAVAMRKGRFELAEGGTLFL
DEVAEMSPGLQVKLLRVLQEMEFERVGGSRTIRVDVRVVAASNRDLKTEVGAGNFREDLFYRLNVVHLAIPPLRQRTDDI
PLLVTHFMQKFARVNNRGDIRLDPEVMKILLRYPWPGNVRELENVIERAVILCSGDTITIADLPPNVAEAPETEFNIDLL
VPQHIPLPEALDTIEQLMIRRALNQSGYVQVRAAELLGITKSLLQYKLKKYQITN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-64 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-64 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desac_0330 YP_004369402.1 Fis family transcriptional regulator BAC0467 Protein 6e-94 49
Desac_0330 YP_004369402.1 Fis family transcriptional regulator BAC0089 Protein 2e-96 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desac_0330 YP_004369402.1 Fis family transcriptional regulator VFG1249 Protein 1e-81 49
Desac_0330 YP_004369402.1 Fis family transcriptional regulator VFG0116 Protein 4e-73 44
Desac_0330 YP_004369402.1 Fis family transcriptional regulator VFG1214 Protein 4e-77 42