Gene Information

Name : Desac_2636 (Desac_2636)
Accession : YP_004371632.1
Strain : Desulfobacca acetoxidans DSM 11109
Genome accession: NC_015388
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator, winged helix family
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2902853 - 2903539 bp
Length : 687 bp
Strand : +
Note : COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: pca:Pcar_0653 two-component response regulator PhoB; PFAM: Signal transduction response regulator, recei

DNA sequence : 
ATGGCCAAAGAACATATTCTCGTGGTGGACGACGAAGAGGACATCCTCGAGTTGGTCCGCTATAATCTCACCAAAGAAGG
TTATCGGGTGACCGCCGTCGCTACCGGTGAAGAGGCATTAAGAACAGCCCACTCGATCCACCCAGAGCTCATCCTGCTGG
ATTTAATGCTGCCGGGAGTAGATGGCCTGGAGGTCTGTCGGAAGTTGAAGCAAGACCCCAAGACCAGCCACGTGCCGATC
ATTATGCTGAGCGCCAAGGGCGAGGAGGCGGATATTGTCACCGGCCTGGAGTTAGGTGCCGCCGACTACGTCACCAAACC
TTTCAGTCCCCGCGTCCTGATTGCCCGGCTGCGGGCGGTCCTCAGGCGCCGGTCGGCCGAACCCCTGTCCGAAAGCGCCC
CTCTTACCATCCATGATCTGGTAATTCATCCCGGCCGACATGAAGTATTGATCCAGGGGCAACAGGTGGATTTGACCGTC
ACTGAATTCCGCCTGCTCCACATGCTGGCCCGCCGTCCCGGGTGGGTGTTTACCCGGTCCCAGATCGTCAATACCGTTCA
CGGCGATGATTATCCCGTTTCCGACCGCTCCGTGGATGTCCAGGTAGTCGGTCTGAGAAAAAAATTAGGCGCCCTGGGAG
ATTACATCGAAACGGTGCGGGGCGTCGGCTACCGCTTTAAAGAATAA

Protein sequence : 
MAKEHILVVDDEEDILELVRYNLTKEGYRVTAVATGEEALRTAHSIHPELILLDLMLPGVDGLEVCRKLKQDPKTSHVPI
IMLSAKGEEADIVTGLELGAADYVTKPFSPRVLIARLRAVLRRRSAEPLSESAPLTIHDLVIHPGRHEVLIQGQQVDLTV
TEFRLLHMLARRPGWVFTRSQIVNTVHGDDYPVSDRSVDVQVVGLRKKLGALGDYIETVRGVGYRFKE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 5e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desac_2636 YP_004371632.1 two component transcriptional regulator, winged helix family NC_012469.1.7685629. Protein 5e-33 49
Desac_2636 YP_004371632.1 two component transcriptional regulator, winged helix family HE999704.1.gene2815. Protein 2e-35 48
Desac_2636 YP_004371632.1 two component transcriptional regulator, winged helix family NC_012469.1.7686381. Protein 9e-35 44
Desac_2636 YP_004371632.1 two component transcriptional regulator, winged helix family NC_002952.2859905.p0 Protein 2e-33 44
Desac_2636 YP_004371632.1 two component transcriptional regulator, winged helix family NC_009641.5332272.p0 Protein 1e-33 44
Desac_2636 YP_004371632.1 two component transcriptional regulator, winged helix family NC_013450.8614421.p0 Protein 1e-33 44
Desac_2636 YP_004371632.1 two component transcriptional regulator, winged helix family NC_007793.3914279.p0 Protein 1e-33 44
Desac_2636 YP_004371632.1 two component transcriptional regulator, winged helix family NC_007622.3794472.p0 Protein 2e-33 44
Desac_2636 YP_004371632.1 two component transcriptional regulator, winged helix family NC_002745.1124361.p0 Protein 1e-33 44
Desac_2636 YP_004371632.1 two component transcriptional regulator, winged helix family NC_009782.5559369.p0 Protein 1e-33 44
Desac_2636 YP_004371632.1 two component transcriptional regulator, winged helix family NC_002951.3237708.p0 Protein 1e-33 44
Desac_2636 YP_004371632.1 two component transcriptional regulator, winged helix family NC_003923.1003749.p0 Protein 1e-33 44
Desac_2636 YP_004371632.1 two component transcriptional regulator, winged helix family NC_002758.1121668.p0 Protein 1e-33 44
Desac_2636 YP_004371632.1 two component transcriptional regulator, winged helix family AE000516.2.gene3505. Protein 1e-34 44
Desac_2636 YP_004371632.1 two component transcriptional regulator, winged helix family CP000034.1.gene3671. Protein 2e-30 43
Desac_2636 YP_004371632.1 two component transcriptional regulator, winged helix family BAC0039 Protein 3e-32 42
Desac_2636 YP_004371632.1 two component transcriptional regulator, winged helix family CP000034.1.gene2186. Protein 3e-32 42
Desac_2636 YP_004371632.1 two component transcriptional regulator, winged helix family NC_002695.1.916589.p Protein 2e-32 42
Desac_2636 YP_004371632.1 two component transcriptional regulator, winged helix family AE016830.1.gene1681. Protein 2e-34 41
Desac_2636 YP_004371632.1 two component transcriptional regulator, winged helix family CP001485.1.gene721.p Protein 1e-25 41
Desac_2636 YP_004371632.1 two component transcriptional regulator, winged helix family CP000647.1.gene2531. Protein 3e-32 41
Desac_2636 YP_004371632.1 two component transcriptional regulator, winged helix family CP001918.1.gene3444. Protein 3e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desac_2636 YP_004371632.1 two component transcriptional regulator, winged helix family VFG1390 Protein 8e-30 43
Desac_2636 YP_004371632.1 two component transcriptional regulator, winged helix family VFG1563 Protein 3e-27 41