Gene Information

Name : Desac_1216 (Desac_1216)
Accession : YP_004370258.1
Strain : Desulfobacca acetoxidans DSM 11109
Genome accession: NC_015388
Putative virulence/resistance : Virulence
Product : Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 1400685 - 1402034 bp
Length : 1350 bp
Strand : +
Note : COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR003593:IPR002078:IPR002197; KEGG: dbr:Deba_0035 two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: RNA

DNA sequence : 
ATGAACCCAGCCCGCATCCTGATCGTCGAAGATGAAACCATCAGTCGGGAAAACCTGCAACACGTCCTGGAGAAGGAGGG
GTATGAGACCGTCGCGGTAGAGAACGGCTCCTTGGCTTATGAAGAGCTGGCCCAGGGCGAGTTTGACCTGGTTCTGACGG
ATTTGCGTATGCAGCAGATTGACGGTTTACAGGTGCTGGCCAGAGCCAAAGAACTCCAACCTGATATCGAAGTGATTGTA
ATTACCGGTTACGCCACAGTGACTTCGGCGGTGGAGGCCATGCAGAAAGGGGCCTACCACTATCTGGCCAAACCTTATAA
AATCGAAGAAGTTCGCATTCTCGTGCGAAAGGCCCTCGAAAAGAGATGGCTCAGACAGGAAGTAAGCCAACTGAAGCGCC
AGGTGCAGCAGGGTTTTCCCTGGTTGGTCGGCAAGAGTACCAAGATGTTGGCCCTGGAGGAAACCATCCGCCAGATTGCG
CCTACGGACTGTACTGTCCTGATCCAGGGAGAGACCGGCACCGGCAAGGAACTGGTGGCTAAAGCCGTTCACCATCTCAG
CAATCGGGCTGAAAAACGGTTTTTGGCTATCAACTGCGGCTCTTTTACCGCCGAACTATTAGCCAATGAACTCTTCGGCC
ATGAACGGGAGGCCTTTACCGGCGCCCGCGGGATTAAACGGGGTCTGCTGGAAGCCGCCAACGGCGGCACGCTCTTTCTT
GATGAGATCGGGGATATGCCGCCCGTGATGCAGGTCAAGTTACTGCGAGTTTTGCAAGAGAAGACCTTCCTGCGGGTTGG
AGGAACCGAAGAGCTGCCGGTAGATGTGCGGATTATTGCCGCCAGCAATAAAGATCTGAAACAAGAGGTGGATCTGGGAA
CTTTTCGGCAGGACCTCTTCTTCCGTCTGAATGTCATTACCCTTTACGTTCCACCGCTGGTAGAGCGCCGGGATGATATC
CCGCTATTGTGTCAACATTTCCTCACGAAGTTTGCCGAAAGCCAGAAAAAACGTGTGGAAGGTATCTCGCCTGAAGTTAT
GACCATTCTCATGAACTACGAATATCCCGGCAACGTTCGGGAATTAGAAAATATTATCGAGCGGGCGGTAACCCTGTCAA
CCGGACCGATTATTGAAATCGGCCACCTCTCCCCCGATCTTCAGAAACACCAATATCACGTCCAGCGGCATCGGAAAAAG
GAGTTTCATACCCTGGAAGAGAATGAAAGGGACTATATTGAATGGGTGTTGGCCCAGGTAGAGGGCAATAAGACTAAGGC
AGCGGAAATATTAGGAATTGACCGCGTCTCACTCTGGCGCAAGCTAAAACGGTTTGATCTGGAACCTTAA

Protein sequence : 
MNPARILIVEDETISRENLQHVLEKEGYETVAVENGSLAYEELAQGEFDLVLTDLRMQQIDGLQVLARAKELQPDIEVIV
ITGYATVTSAVEAMQKGAYHYLAKPYKIEEVRILVRKALEKRWLRQEVSQLKRQVQQGFPWLVGKSTKMLALEETIRQIA
PTDCTVLIQGETGTGKELVAKAVHHLSNRAEKRFLAINCGSFTAELLANELFGHEREAFTGARGIKRGLLEAANGGTLFL
DEIGDMPPVMQVKLLRVLQEKTFLRVGGTEELPVDVRIIAASNKDLKQEVDLGTFRQDLFFRLNVITLYVPPLVERRDDI
PLLCQHFLTKFAESQKKRVEGISPEVMTILMNYEYPGNVRELENIIERAVTLSTGPIIEIGHLSPDLQKHQYHVQRHRKK
EFHTLEENERDYIEWVLAQVEGNKTKAAEILGIDRVSLWRKLKRFDLEP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-62 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-62 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desac_1216 YP_004370258.1 Fis family transcriptional regulator BAC0467 Protein 5e-86 45
Desac_1216 YP_004370258.1 Fis family transcriptional regulator BAC0089 Protein 2e-91 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desac_1216 YP_004370258.1 Fis family transcriptional regulator VFG0116 Protein 4e-70 42
Desac_1216 YP_004370258.1 Fis family transcriptional regulator VFG1214 Protein 2e-72 41
Desac_1216 YP_004370258.1 Fis family transcriptional regulator VFG1249 Protein 1e-61 41