Gene Information

Name : Marky_1263 (Marky_1263)
Accession : YP_004368113.1
Strain : Marinithermus hydrothermalis DSM 14884
Genome accession: NC_015387
Putative virulence/resistance : Virulence
Product : 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG1012
EC number : 1.2.1.8
Position : 1258796 - 1260316 bp
Length : 1521 bp
Strand : +
Note : COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590:IPR011985; KEGG: msv:Mesil_2311 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain; PRIAM: betaine-aldehyde dehydrogenase; SPTR: 5-carbox

DNA sequence :
ATGAGGCGAGCCTTTGATCCGGCCTTCATCGAGTCGGTGCGCGAGCGCATCGCGAAGACCACGGTGCCGCACTTCATCGG
GAACGCCTTCGTACCCGGCGCGCGCGGCGAGACCTTCGAGACCCTGGACCCGGCCACGAACCGGGTGCTGGGGCGCGTCT
ACCGCGGGCACGCGGAGGACGTCGCCAAGGCCGTGCAGGCCGCCCGCGCGGCGTTCGAGGGCCCGTGGGGGCGCACCAAG
GCCAAGGAGCGCAAGCGCTACCTCCTCAAGATCGCCGAGCTTTTAGAGAAGCACGCGGACGAGCTCGCGGTGATCGAGTG
CCTCGACGCCGGTCAGGTGCTCAAGATCGTGCGCAAACAGGTCGCGCGCGCGGCGGAGAACTTCAGCTTCTACGCGGAGT
ACGCCGAGCGCGCCATGGACGGGCACACCTACCCTGTGGACCAGGACTGGGTCAACTACACCGTCCGCGTGCCCGTGGGC
GTCACCGGGATCATCACCCCCTGGAACGCCCCCCTGATGCTCTCCACCTGGCGGATCGCGCCCGCACTCGCCGCCGGGAA
CACCGTGGTCCTCAAACCCGCGGAATGGTCCCCCCTCACGGCCTGGAAGCTCGCGGAGATCATCCAGGAGGCCGACCTGC
CCCCCGGCGTGTTCAACGTGGTCCAGGGGTTCGGGGAGGAGGCCGGCGCGCCCCTCGTCGCGCACCCCGACGTGCCCCTC
ATCTGCCTCACCGGCGAGACCACGACCGGCCAGATCGTGATGCGCAACGGGGCCGACCACCTCAAGCGCCTCTCCCTCGA
GCTCGGCGGCAAAAGCCCCGCGATCATCTTCGAGGACGCGGACCTCGAGCGCGCCCTGGACGCCACCGTCTTCCAGATCT
ACTCCTTCAACGGCGAGCGCTGCACGGCCAACTCCCGCGCCCTCATCCAAGAGTCCATCTTCGAAGCCTTCGTCGCACGA
CTCGCGGAACGCGCCCAAAACATCCGGGTGGGCCACCCCCTCGACCCCGAGACCGAGGTCGGCCCCCTGATCCACCCCGA
GCACCTCGAGCGCGTCCTGGGCTACATCCAGATCGGCCAGGAAGAGGGGGCGCGGCTCGTGGCGGGCGGCCAGCGCCTCG
GCACGGAGGGGAACTACGTCGCCCCCACCCTGTTCGTGGGGGAAAACCACATGCGGATCGCGCAGGAGGAGATCTTCGGG
CCCGTACTCGTCGCCATCCCCTTCAAAGACGAAGCCGACGCCCTAAAGAAAGCCAACGACACAAAGTACGGCCTGGCCGC
CTACGTCTGGACCCGGGACGTGACCCGCGCGCACCGCGTGGCCCTCCGGCTCGAGGCCGGCATGACCTGGATCAACAGCC
ACAACGTGCGGCACCTGCCCACGCCCTTCGGCGGCATGAAGTTCTCCGGCACGCACCGCGAGGGCGGGCAGTACGCCCTC
GAGTTCTACACCGAGATCAAGAACATCGCCGTGCCGCTCGGCGAGCACCCCATCCCCAAGTTCGGCAAAAAGGAGGCGTA
A

Protein sequence :
MRRAFDPAFIESVRERIAKTTVPHFIGNAFVPGARGETFETLDPATNRVLGRVYRGHAEDVAKAVQAARAAFEGPWGRTK
AKERKRYLLKIAELLEKHADELAVIECLDAGQVLKIVRKQVARAAENFSFYAEYAERAMDGHTYPVDQDWVNYTVRVPVG
VTGIITPWNAPLMLSTWRIAPALAAGNTVVLKPAEWSPLTAWKLAEIIQEADLPPGVFNVVQGFGEEAGAPLVAHPDVPL
ICLTGETTTGQIVMRNGADHLKRLSLELGGKSPAIIFEDADLERALDATVFQIYSFNGERCTANSRALIQESIFEAFVAR
LAERAQNIRVGHPLDPETEVGPLIHPEHLERVLGYIQIGQEEGARLVAGGQRLGTEGNYVAPTLFVGENHMRIAQEEIFG
PVLVAIPFKDEADALKKANDTKYGLAAYVWTRDVTRAHRVALRLEAGMTWINSHNVRHLPTPFGGMKFSGTHREGGQYAL
EFYTEIKNIAVPLGEHPIPKFGKKEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hpaE AAO17179.1 HpaE Not tested tcd island Protein 2e-104 51
ORF SG19 AAN62241.1 putative aldehyde dehydrogenase Not tested PAGI-3(SG) Protein 4e-75 43
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 2e-79 42
aldA AAC12273.1 aldehyde dehydrogenase Virulence VPI Protein 2e-80 41
aldA AAK20747.1 aldehyde dehydrogenase Virulence VPI Protein 2e-80 41
aldA AAK20776.1 aldehyde dehydrogenase Virulence VPI Protein 2e-80 41
aldA-1 YP_001216300.1 aldehyde dehydrogenase Not tested VPI-1 Protein 4e-80 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Marky_1263 YP_004368113.1 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase VFG0082 Protein 6e-80 42