Gene Information

Name : Tresu_0649 (Tresu_0649)
Accession : YP_004364887.1
Strain : Treponema succinifaciens DSM 2489
Genome accession: NC_015385
Putative virulence/resistance : Unknown
Product : integron integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 716056 - 717288 bp
Length : 1233 bp
Strand : +
Note : COGs: COG4974 Site-specific recombinase XerD; InterPro IPR011946:IPR002104; KEGG: cph:Cpha266_0257 integron integrase; PFAM: Integrase, catalytic core, phage; SPTR: Integron integrase; TIGRFAM: Integrase, integron-type; PFAM: Phage integrase family; TIGRF

DNA sequence : 
ATGCAAGTATTAATACAGCCATATGGCAAATCTGAGATTTCTCTATCGTTTCTGTCTGGTTTTACAGAACCTGTATTAAA
TGCTGTACGAAGGCTTCCCAACCGCAGGTACGAACCCTCACAAAGAATCTGGATTATACCGGATAGTCAGGAATGTATCG
ATTCGCTCTTACAGAATCTCTACTTAACGGGGCTTTTCACTTATGAGGATGTTAATGAAAATCAGAATTATCCGAGAAAT
ACAAACGACGAATTAATTAATGATTATGTTCAAAATGAAACAAAAAAACTTGAAGAAGTGTTGAAGGTTCGTCATTATTC
AAAATGTACAATTGACCGCTATAAAAAATGGGTTCAACTTTTTCTTACTCAAAATAGTGCATCGGAAAGCAATTGTAATA
ATCAGTCTGCACAGAAAGAAATAAATGAATATTTAAAGTTTCTGGCACTAAAAAAGAATGTCAGTGCATCAACGCAGAAT
CAGGCTCTCGCAGCGCTTCTTTTCTATTATAGATTTGTAAAAAATGAGCCTATGGAAAAATTAACGAATGTTGTCCATGC
AAAGAAAAAAACAAGAATTCCTGTTGTCTTTAGCCGGCAGGAAGTTTCTAAAATCATTGGAAATCTGACAGGAACAAAAA
AACTTATAGCAAAGCTTCTTTATGGAACCGGACTGAGACTAAATGAGGCTTTGTCGCTTAGAATCTTAGATTTAGATTTT
GACAGAAATGAAATAATTGTTCGTCACGGAAAAGGCGACAAAGACCGCCATGTAATGATTCCCCGAACGCTCATTTGCGA
ATTAAAATCTCATATAGAAAATTTACGAAAAATTCACGAAGAAGATTTAAAGGCTGGTTTTGGCTCCGTAAAACTTCCCC
AGGCTCTTTCTGATAAGTATCAGGGCGGAAGCAAGGAATTTAAATGGCAATGGCTTTTTCCACAAAAAAATAGATGGAAA
AATCCCCAGACAGGTGAGGAAGGCAGATGGCATTTAGATGAATCACTTATGCAGCGTGCCGTAAAACAAGCCATTTTGGA
AGCTGGCATCAATAAAAACGCAAGTTGCCACACCTTTCGTCATTCTTTTGCAACTCACTTGCTGGAAAACGGATACGATA
TAAGGACAATCCAGGAGCTTCTTGGTCACAGCGATGTGAGTACCACAATGATTTATACCCATGTCCTAAATCGCGGAGCC
GGTGGTGTAATAAGTCCTCTGGATAAAATGTAA

Protein sequence : 
MQVLIQPYGKSEISLSFLSGFTEPVLNAVRRLPNRRYEPSQRIWIIPDSQECIDSLLQNLYLTGLFTYEDVNENQNYPRN
TNDELINDYVQNETKKLEEVLKVRHYSKCTIDRYKKWVQLFLTQNSASESNCNNQSAQKEINEYLKFLALKKNVSASTQN
QALAALLFYYRFVKNEPMEKLTNVVHAKKKTRIPVVFSRQEVSKIIGNLTGTKKLIAKLLYGTGLRLNEALSLRILDLDF
DRNEIIVRHGKGDKDRHVMIPRTLICELKSHIENLRKIHEEDLKAGFGSVKLPQALSDKYQGGSKEFKWQWLFPQKNRWK
NPQTGEEGRWHLDESLMQRAVKQAILEAGINKNASCHTFRHSFATHLLENGYDIRTIQELLGHSDVSTTMIYTHVLNRGA
GGVISPLDKM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 1e-59 46
intI YP_001844881.1 integrase Not tested AbaR20 Protein 1e-59 46
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 1e-59 46
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 1e-59 46
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 1e-59 46
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 1e-59 46
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 1e-59 46
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 1e-59 46
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 1e-59 46
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 3e-59 46
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 1e-59 46
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 1e-59 46
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 1e-59 46
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 1e-59 46
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 1e-59 46
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 1e-59 46
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 2e-59 46
intI1 AAK02045.1 integrase Not tested SGI1 Protein 9e-60 45
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 9e-60 45
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 9e-60 45
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 9e-60 45
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 9e-60 45
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 9e-60 45
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 9e-60 45
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 9e-60 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tresu_0649 YP_004364887.1 integron integrase VFG1028 Protein 2e-59 46