Gene Information

Name : Tresu_1065 (Tresu_1065)
Accession : YP_004365278.1
Strain : Treponema succinifaciens DSM 2489
Genome accession: NC_015385
Putative virulence/resistance : Virulence
Product : polysaccharide biosynthesis protein CapD
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1086
EC number : -
Position : 1126767 - 1128293 bp
Length : 1527 bp
Strand : -
Note : COGs: COG1086 nucleoside-diphosphate sugar epimerase; InterPro IPR003869; KEGG: tde:TDE0714 capsular polysaccharide biosynthesis protein; PFAM: polysaccharide biosynthesis protein CapD-like; SPTR: Capsular polysaccharide biosynthesis protein; PFAM: CoA bi

DNA sequence : 
ATGAATAAAATCGAAGGCAGACTATATATAATAGGCGCAGGCTTTGCCGGACAAATGATTGCAAACGACATTGCGAAAAA
AAAAGTCTTTGGAACAGTTTCTGCGTTTCTCGATGATGATAAAAATTTAATCGGAACAAAAATTGACGGCATACCTGTTA
TAGGTCCGATTGACAGTATTGCGGACGTTTTGCGTGTAAACGGAGCAGACCAAGCCGTAATTGCAATTCCAAGCGCACCA
GTTGAAAGAATCAGAAAAATTTATTCCTCCTTAAAAAAATGCGGATTTTTTCAGATAAAAATTCTGCCTTCAATAAGCCA
AGTCATTGACGAAAAAGCCCACATAATTCAAGCCCGCGATATAAATCCGCTGGACATTCTAGGAAGAACTCCAGTAACAA
TTCCGCTTGCAAAAAGCCTTTCGTATTTAAGAGGAAAACGTGTTCTAATAACAGGAGCAGGCGGCTCAATCGGCAGCGAG
CTTGCACGTCAGCTTCTTTCAGGCGGAGCAGAACGGCTTTATCTTTTTGGACACGGCGAGAATTCAATTGTAAATATTTA
CAGGGAACTTCATGTTCTTCAGGATGAAGGCGTAGGACAAAAGGCTTCAATTGTTCCAATAATCGGCGACATGAAAGACA
GGGAATACGTAAAGTACATAATTTCTCACACTCATGCTGATGTTATCTTTCACTGTGCCGCATACAAACATGTTCCAATG
ATGGAAGAGAATTCTATAGCCGCAATTGAAAACAATGTATTCGGAACAAAGAATCTTCTGGATGCCGCGCTTGAATCTGG
AACTGAAAAATTCGTGCTTATTTCAACAGACAAAGCCGTTGAGCCTGTAAGCGTTTACGGCGCAAGCAAAATGCTATGTG
AAAAACTTGTAATTCAAGCCGCGCAAAACGCAAAGAAAAACCAAGCGTTTATGTTTGTCCGCTTCGGAAATGTTCTTGGA
AGCCGAGGCTCAATTCTTCCTATTTTTATGGAGCAGATTCAAAACGGAGGTCCTGTAACTGTAACCGATCCACAAATGGA
ACGCTACTTTATGACAATTCCAGAGGCCTGCTCTCTTGTGCTTCAGACTGGAGGCGTTGGAACAAACGGAGCATCGTACC
TTTTGGACATGGGCGAGCCTATAAAAATTCTGGAGCTTGCAAAGCAGGTAATAAAGTTTTCTGGATTTACGCCGGACAAA
GAAATAAAAATTCAGTTTATCGGAGCAAGAAAAGGCGAACGCTTGGAAGAACCTTTGTGGCTAAAAGAAGAAAATCCTGA
GCCTACAGAATACAAAAAAATTCTAAAGCTCACAAATATTTCTCCTAAAAATTTTTCACTTGATAAGTTGATTGATTCTT
TAAATCCAATCTGCGTGCTTTCTAAAGGTAAAGAAGAACTTTACAGGAACAGTGGTGAACTGAAAAAAATTCTAAGAAAA
GCAGTTCCAACCCTTGACGAATTTTACAAGCGTGAAGAAAACTTATCAGCAAAAAATGAAAAGTCTTATGCAAAGGCGGT
TTTATAA

Protein sequence : 
MNKIEGRLYIIGAGFAGQMIANDIAKKKVFGTVSAFLDDDKNLIGTKIDGIPVIGPIDSIADVLRVNGADQAVIAIPSAP
VERIRKIYSSLKKCGFFQIKILPSISQVIDEKAHIIQARDINPLDILGRTPVTIPLAKSLSYLRGKRVLITGAGGSIGSE
LARQLLSGGAERLYLFGHGENSIVNIYRELHVLQDEGVGQKASIVPIIGDMKDREYVKYIISHTHADVIFHCAAYKHVPM
MEENSIAAIENNVFGTKNLLDAALESGTEKFVLISTDKAVEPVSVYGASKMLCEKLVIQAAQNAKKNQAFMFVRFGNVLG
SRGSILPIFMEQIQNGGPVTVTDPQMERYFMTIPEACSLVLQTGGVGTNGASYLLDMGEPIKILELAKQVIKFSGFTPDK
EIKIQFIGARKGERLEEPLWLKEENPEPTEYKKILKLTNISPKNFSLDKLIDSLNPICVLSKGKEELYRNSGELKKILRK
AVPTLDEFYKREENLSAKNEKSYAKAVL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0063 YP_300153.1 capsular polysaccharide biosynthesis protein Not tested SCC15305cap Protein 3e-62 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tresu_1065 YP_004365278.1 polysaccharide biosynthesis protein CapD VFG1300 Protein 1e-62 42