Gene Information

Name : PSEBR_a748 (PSEBR_a748)
Accession : YP_004351914.1
Strain : Pseudomonas brassicacearum NFM421
Genome accession: NC_015379
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 968883 - 970139 bp
Length : 1257 bp
Strand : -
Note : -

DNA sequence : 
ATGTGCGCTCAAGCTATTCGCCTTTCTGAACTCAAGATCAAAGCCGCCAAGCCTTTAGAGAAAGATTACGTCCTGGTCGA
CGGCGACGGCCTACAGATGCGAGTGAGAATCAATGGCTCTAAACTATGGAACTTTAACTACTACCATCCTGTAACCAAGA
AGCGCATCAACATGGGCCTTGGCGCATACCCTGAGCTGTCTCTTGCCCAAGCAAGGAAAATGACCATTAAGGCAAGGGAA
CTCCTTGCTACTGGTATTGATCCGAAAGAGCAGCGAGATACCCTGAGGCAATCTAAGAAGGCTGAAACCGAACATACTTT
TCAGAACGTAGCGACGGCTTGGTACGAGCTCAAAAAAGACTCAGTAACGCCAGCTTATGCTGAGGACATCTGGCGTTCGC
TGACGCTGCACGTTTTCTCGGATTTGGGCACCACACCGATCTCAGCCATCGGCGCACCACAAGTCATCAACCTGCTTCGG
CCACTCGAAACCAAAGGCAGCCTTGAAACGGTTAAACGGCTGTCACAACGCCTCAATGAGATCATGACTTATGGAGTCAA
CTCAGGACTCATTCACGCAAATCCGCTCAGCGGGATTCGTTCAGTCTTCAAGAAGCCGAAAAAGAAAAACATGGCTGCAC
TCGCTCCCGATGAGCTCAAAGAGCTCATGATGACAATTGCCAATGCCAGCATAAAAAGGACGACACGCTGCCTAATCGAA
TGGCAACTCAACACCATGACCCGTCCAGCAGAAGCAGCCACCACCCGCTGGGCCGATATCGACTTCGAAAAGCGTATCTG
GACGATTCCAGCTGAACGCATGAAAAAGCGCCGCATACATATCGTGCCGCTCACTGAGCAAGCACTGGCGCTTTTGGAGG
CAATCAAACCCTACAGCGGACACCGGGAGTACGTGTTCCCTGCAGACCGTAATCCGCGCACCCACTGCAACAGCCAGACC
GCCAACATGGCGCTGAAGCGCATGGGATTCGAAGGGCGCTTGGTCAGCCATGGCATGCGCTCAATGGCCAGCACCATCCT
CAATGAGCACGGCTGGGACCCTGAACTGATCGAAGTAGCACTTGCCCACGTCGATAAAGATGAGGTTCGCAGCGCCTACA
ATCGGGCGGACTACATTGAACGCAGACGTCCCATGATGGCCTGGTGGAGCGAACACATTCAGGAAGCAGCAACCGGCAAC
CTATCGGTGTCAGCTATCAAGGAAAACTGGGACAGAAAAGTCGTCCCGATACGCTGA

Protein sequence : 
MCAQAIRLSELKIKAAKPLEKDYVLVDGDGLQMRVRINGSKLWNFNYYHPVTKKRINMGLGAYPELSLAQARKMTIKARE
LLATGIDPKEQRDTLRQSKKAETEHTFQNVATAWYELKKDSVTPAYAEDIWRSLTLHVFSDLGTTPISAIGAPQVINLLR
PLETKGSLETVKRLSQRLNEIMTYGVNSGLIHANPLSGIRSVFKKPKKKNMAALAPDELKELMMTIANASIKRTTRCLIE
WQLNTMTRPAEAATTRWADIDFEKRIWTIPAERMKKRRIHIVPLTEQALALLEAIKPYSGHREYVFPADRNPRTHCNSQT
ANMALKRMGFEGRLVSHGMRSMASTILNEHGWDPELIEVALAHVDKDEVRSAYNRADYIERRRPMMAWWSEHIQEAATGN
LSVSAIKENWDRKVVPIR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 1e-138 64
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 1e-138 64
int AAK20773.1 integrase Not tested VPI Protein 1e-138 64
int AAK20803.1 integrase Not tested VPI Protein 1e-138 64
unnamed AAA82714.1 integrase Not tested VPI Protein 1e-138 64
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 1e-111 53
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 2e-101 50
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 5e-101 50
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 5e-101 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSEBR_a748 YP_004351914.1 integrase VFG1092 Protein 2e-101 50