Gene Information

Name : PSEBR_a5560 (PSEBR_a5560)
Accession : YP_004357094.1
Strain : Pseudomonas brassicacearum NFM421
Genome accession: NC_015379
Putative virulence/resistance : Virulence
Product : hemolysin co-regulated type VI secretion system effector
Function : -
COG functional category : S : Function unknown
COG ID : COG3157
EC number : -
Position : 6704439 - 6704927 bp
Length : 489 bp
Strand : +
Note : -

DNA sequence :

ATGGCTGTTGATATTTTCATCAAGATTGGCGACATCAAGGGCGAGTCCATGGACAAGGCCCACAAGGACGAGATCGATGT
CCTGAACTGGAGCTGGGGCATGTCCCAGTCCGGCAACATGCACGTGGGCAGCGGCGGTGGTGCGGGCAAGGTCAACGTCC
AGGACCTGTCCCTGACCAAGTACGTCGACAAGGCGTCGCCGAACCTGATGATGCACTGCGCCAGCGGCAAGCACATCGAC
AAGGTCAAGCTGACCGTGCGCAAGGCCGGCGGTGAAAGCCAGGTCGAGTACATGATCATCAACCTGGAAGAAGTGCTGGT
CACTTCCCTGAGCACCGGCGGCTCGGGCGGCGATGATCGCCTGACTGAAAACGTCACCCTGAACTTCGCCAAGGTGCTGG
TGGACTACCAGCCACAGAAAGCCGACGGCACCAAGGAAGGCGGTCCGGTCAAGTTCGGCTGGAACATCCGTCAGAACGTC
AAGGTGTAA

Protein sequence :

MAVDIFIKIGDIKGESMDKAHKDEIDVLNWSWGMSQSGNMHVGSGGGAGKVNVQDLSLTKYVDKASPNLMMHCASGKHID
KVKLTVRKAGGESQVEYMIINLEEVLVTSLSTGGSGGDDRLTENVTLNFAKVLVDYQPQKADGTKEGGPVKFGWNIRQNV
KV

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
STY0302	NP_454882.1	conserved hypothetical protein	Not tested	SPI-6	Protein	1e-26	45

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
PSEBR_a5560	YP_004357094.1	hemolysin co-regulated type VI secretion system effector	VFG2071	Protein	2e-47	79