Gene Information

Name : PSEBR_a5390 (PSEBR_a5390)
Accession : YP_004356901.1
Strain : Pseudomonas brassicacearum NFM421
Genome accession: NC_015379
Putative virulence/resistance : Unknown
Product : RNA polymerase sigma factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 6509326 - 6509919 bp
Length : 594 bp
Strand : +
Note : -

DNA sequence : 
ATGTGGATCGACGCTATGGAACCTACCCAGAGGGATTTATTGATGAACAGCCTGAATCTCATGGCCCCACCGCAAACCTC
CCCGGCACCCACCGGTGCGCCAGGCATCTGCTTCGGCGAGGAACGCAAGCTGCGTCTGTTTGTGCAAAAACGTGTACTCA
ATCAAGACGACGCCGATGACATCATCCAGCTCACGTACCTGGAAGCCTGGCGCAACCAGCAGAAGTTCAGAGGGCTGGCA
AAGCAGGACACCTGGTTGTGCGGCATCGCCCTCAACCTGATCCGCAACCATTTCCGCCGCTTCTACGCGCAGCCGCCGCT
GACTACTTTCGACGAAAGCGAGTTCCACGAGTCCAGTGACGACATTGACCTGAGTGAACTGTGCGACAACCGTCGGCTGT
TGGACCGTACGCTGTTAGCCATGGACGCGCTGTCCAAGGACATGCGCGATACCCTGTGGACCGCCGTCGATACCGAGAGC
AGCTACCGCGATGCCGCCGAACGTCTGGGCGTCCCCATTGGCACCGTACGCTCAAGGTTGTTTCGTGCGCGTGAACAACT
CAAACGAAGCGTCTATGGAGAAGCCCGGCCATGA

Protein sequence : 
MWIDAMEPTQRDLLMNSLNLMAPPQTSPAPTGAPGICFGEERKLRLFVQKRVLNQDDADDIIQLTYLEAWRNQQKFRGLA
KQDTWLCGIALNLIRNHFRRFYAQPPLTTFDESEFHESSDDIDLSELCDNRRLLDRTLLAMDALSKDMRDTLWTAVDTES
SYRDAAERLGVPIGTVRSRLFRAREQLKRSVYGEARP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpL AAT96335.1 HrpL Virulence S-PAI Protein 1e-36 56
hrpL ABA47271.1 HrpL Virulence S-PAI Protein 8e-35 52
hrpL ABQ88350.1 HrpL Virulence Hrp PAI Protein 6e-30 44
hrpL AAA17652.1 putative alternate sigma factor Virulence Hrp PAI Protein 6e-30 44
hrpL NP_791231.1 RNA polymerase sigma factor HrpL Virulence Hrp PAI Protein 5e-32 44
hrpL AAR25629.1 RNA polymerase sigma factor HrpL Not tested Not named Protein 1e-27 43
hrpL AAT96137.1 HrpL Virulence T-PAI Protein 2e-30 43
hrpL AAT96191.1 HrpL Virulence T-PAI Protein 2e-30 43
hrpL AAG33875.2 HrpL Virulence Hrp PAI Protein 3e-31 43
hrpL AAD24681.1 sigma factor HrpL Virulence Hrp PAI Protein 2e-23 42