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Name : PSEBR_a5388 (PSEBR_a5388) Accession : YP_004356898.1 Strain : Pseudomonas brassicacearum NFM421 Genome accession: NC_015379 Putative virulence/resistance : Virulence Product : type III secretion protein, membrane protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 6505837 - 6507924 bp Length : 2088 bp Strand : - Note : - DNA sequence : ATGATCGCCCTGTTGAACAAAGTCGCCAACGAAGCGGTGCGGCGCATCGAGGTGGTCGGGGCGTTCGTGGTGCTCGGCAT CGTGTTCATGCTGATCCTGCCCTTGCCGACCCCGGTGGTCGATGCGCTGATCGCGATCAACATCTGTATCTCCTGCCTGC TGATCGTGATCTCGCTGTACCTGCCGCGGCCGTTGGCATTTTCCTCGTTTCCCGCGGTGCTGCTGCTGACCACGCTGTTC CGGTTGGCATTGTCGGTGGCGACCACCCGATTGATCCTGCTCCAGGGCGACGCCGGTCATATCGTCCAGGCGTTCGGCAA TTTTGTGGTGGGAGGCAACCTGGCGGTCGGGTTGGTCATCTTCCTCATTCTGACGGTGGTCAACTTCCTGGTGATCACCA AAGGCTCGGAGCGGGTCGCCGAAGTGGCGGCGCGATTCACGCTGGATGCGCTGCCGGGCAAGCAGATGTCCATCGACAGC GACCTGCGCGCCAACCTGATCGATGTCACTGAAGCTCGGCGGCGCCGCGAGGAGCTGAACAAGGAAAGCCAGCTGTTCGG TGCGATGGACGGGGCGATGAAATTCGTCAAGGGCGACGCCATCGCAGGCTTGGTGATCGTGGTGATCAACCTCATAGGCG GCTTTACGGTCGGCATGATGCAGCACGACATGGGCGCGTCCGAATCGATGCACTTGTATGCCGTGTTGACCATTGGTGAC GGTCTGATCGCGCAGATTCCGGCACTGCTGATTTCCCTTACTGCGGGCATGATCATCACCCGGGTGTCGCCGGAAGGGCA GCCAGCGGGTAGCAGCGTCGGCAAGGAAATCGCCCAGCAATTGACCGCCGAACCCAAGGCCTGGGTGATCGCTTCGGTGG GGATGCTCGGTTTTGCGGCCTTGCCCGGCATGCCCACGCTGGTGTTCATCGTCATCGCCTTGATCACCGGCACCGCCGGC ATCGTTCAGCTGTACTCGCGCGCACGGCAGGTACGCCAGGGCAAACAACCAGCGGAGGTCGTGGCTCCCGCACACAATGG TGCTGAAGACCTGCGCAGCTTCGACCCGACCCGCGCCTTTCTTTTGCAGTTTTCCAAAGCCATGGAAGGCAATGCGGCCG CCGAGGAAGTCATCCAGGCGATCCGCAAGAAGCGTAACGCGCTGGTGGCCGGCTTTGGCCTGACCTTGCCGCCCTTTGAG ATCGAATACAGCGTGCTGCTGGAAGACGACGAGTTCCGCTTCTGTGTGCATGAGGTGCCGATGTTGCGGGCAACCTTCGG TGAGCGTATTGCCGTGGCGCGCGGGCCGCTGCCGTTCGAACCGCGCGACGGGCTGGTCGGCAACGAGGTGCGTGACGAGC AGCAGTGGCTATGGCTGACGCCTGACGATCCGCTGCTGGCGGACGAACGCGTGGAGGCGGTGCCGGCTGCCGAGTTGCTG GTGGAGCGGATGAGCCGCGCCATGTTCGCCACGGGCCCGCAATTCTTGGGGCTTCAGGAAAGCAAGTCGATTCTCAGTTG GCTCGAAGCAGGTCAGCCAGAGCTGGTGCAGGAGCTGCAGCGGACCATGCCACTGGCGCGGTTTGCCGCCGTGCTCCAGC GCCTGGCCGGCGAAGGCGTCCCGCTGCGTGCAGTGCGCCTGATCGCCGAGTCGTTGATCGAGCATGGGCAGCATGAGCGT GACGTCGGTGCGCTGACCGACTACGCGCGCATCGCCCTGAAGTCGCAGATCTATCACCAGTACCGCGACGAAAACGGCCT GCACGTGTGGTTGTTGACGCCGGAAACCGAAGGCCTGCTGCGCGACGCGTTGCGCCAGACCCAGACGGAAACCTTCTTTG CCCTGGAAAGCCTGCATACCCGCGCCCTGGTGATGCAGTTGCGCGAAGGTTTCCCGTTGCGCGCCAAGCGCGTGGCCGTG CTGTTGGTGGCGCAAGACTTGCGGGCGCCGCTGCGCGATCTGTTGCGCGACGAGTTCAATCACGTGCCTGTACTCGCCTT CAGCGAGCTGCACAGCAACGCCCAGGTCACCGTGCTGGGGCGCTTTGACCTCGAGCAGGAAAAACTACGGATGGAGGATG CCGCGTGA Protein sequence : MIALLNKVANEAVRRIEVVGAFVVLGIVFMLILPLPTPVVDALIAINICISCLLIVISLYLPRPLAFSSFPAVLLLTTLF RLALSVATTRLILLQGDAGHIVQAFGNFVVGGNLAVGLVIFLILTVVNFLVITKGSERVAEVAARFTLDALPGKQMSIDS DLRANLIDVTEARRRREELNKESQLFGAMDGAMKFVKGDAIAGLVIVVINLIGGFTVGMMQHDMGASESMHLYAVLTIGD GLIAQIPALLISLTAGMIITRVSPEGQPAGSSVGKEIAQQLTAEPKAWVIASVGMLGFAALPGMPTLVFIVIALITGTAG IVQLYSRARQVRQGKQPAEVVAPAHNGAEDLRSFDPTRAFLLQFSKAMEGNAAAEEVIQAIRKKRNALVAGFGLTLPPFE IEYSVLLEDDEFRFCVHEVPMLRATFGERIAVARGPLPFEPRDGLVGNEVRDEQQWLWLTPDDPLLADERVEAVPAAELL VERMSRAMFATGPQFLGLQESKSILSWLEAGQPELVQELQRTMPLARFAAVLQRLAGEGVPLRAVRLIAESLIEHGQHER DVGALTDYARIALKSQIYHQYRDENGLHVWLLTPETEGLLRDALRQTQTETFFALESLHTRALVMQLREGFPLRAKRVAV LLVAQDLRAPLRDLLRDEFNHVPVLAFSELHSNAQVTVLGRFDLEQEKLRMEDAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcV | ABA47273.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 67 |
| hrcV | AAT96297.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 67 |
| hrcV | AAT96337.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 67 |
| hrcV | AAT96256.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 67 |
| hrcV | AAT96193.1 | HrcV | Virulence | T-PAI | Protein | 0.0 | 66 |
| hrcV | AAT96139.1 | HrcV | Virulence | T-PAI | Protein | 0.0 | 66 |
| hrcV | NP_791229.1 | type III secretion protein HrcV | Virulence | Hrp PAI | Protein | 0.0 | 65 |
| hrcV | ABQ88352.1 | HrcV | Virulence | Hrp PAI | Protein | 0.0 | 65 |
| hrpI | AAA03015.1 | HrpI | Virulence | Hrp PAI | Protein | 0.0 | 65 |
| hrcV | AAG33877.1 | HrcV | Virulence | Hrp PAI | Protein | 0.0 | 64 |
| hrcV | AAB05999.2 | HrcV | Virulence | Hrp PAI | Protein | 0.0 | 64 |
| hrcV | AAR25631.1 | type III secretion protein HrcV | Not tested | Not named | Protein | 0.0 | 63 |
| invA | AAS66860.1 | InvA | Not tested | SSR-2 | Protein | 5e-88 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PSEBR_a5388 | YP_004356898.1 | type III secretion protein, membrane protein | VFG0064 | Protein | 2e-115 | 43 |
| PSEBR_a5388 | YP_004356898.1 | type III secretion protein, membrane protein | VFG0198 | Protein | 5e-92 | 41 |
| PSEBR_a5388 | YP_004356898.1 | type III secretion protein, membrane protein | VFG0384 | Protein | 2e-109 | 41 |
