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Name : PSEBR_a5382 (PSEBR_a5382) Accession : YP_004356892.1 Strain : Pseudomonas brassicacearum NFM421 Genome accession: NC_015379 Putative virulence/resistance : Virulence Product : type III secretion protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4790 EC number : - Position : 6500710 - 6501363 bp Length : 654 bp Strand : - Note : - DNA sequence : ATGAGCTTCCAGGGGGTCGACCCCTTTCTGTTGGCGCTGTTCATTGGTGGGATTTCGCTGGTCCCCTTGCTGCTGATCAT CTGCAGCGCCTTTCTCAAGATAGCCATTGTGTTGACCATCACCCGTAACGCCATCGGCGTGCAGCAGGTGCCACCCAATA TGGCCTTGTATGCCATTGCCCTGGCCGCGACGCTGTTCATCATGGCGCCGGTGGGCCACAACATCGCCGAACAGGTGAAA GAACGGCCGTTGGATTTCAGCAATACCGAGGCGTTGCAAGGCTCTGCCTTGAACGCGATAAAACCGTTGCAGGCCTTCAT GTCGCGCAATACCAACCCGGACATCCTCGCCCACTTGCTGGAAAACACCCAGCGGATGTGGCCCAAGGAACGCGCCGAGC AGGCCAGCCGCGATGACCTGATGCTGCTCATCCCGGCCTTCATGTTGTCGGAGCTCGAGGCCGGTTTCCAGATGGGATTC CTGATCTATATCCCGTTCATTGTCATCGACCTGATCGTGTCCAACCTGCTGCTGGCGCTCGGCATGCAGATGGTCGCGCC CATGACCATTTCGTTGCCGCTCAAGCTGCTGATTTTTGTCCTCGTGCAGGGCTGGACGCAATTGCTCGACAGCCTCTTCT ATTCCTATCTTTGA Protein sequence : MSFQGVDPFLLALFIGGISLVPLLLIICSAFLKIAIVLTITRNAIGVQQVPPNMALYAIALAATLFIMAPVGHNIAEQVK ERPLDFSNTEALQGSALNAIKPLQAFMSRNTNPDILAHLLENTQRMWPKERAEQASRDDLMLLIPAFMLSELEAGFQMGF LIYIPFIVIDLIVSNLLLALGMQMVAPMTISLPLKLLIFVLVQGWTQLLDSLFYSYL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcR | AAG33884.1 | HrcR | Virulence | Hrp PAI | Protein | 6e-72 | 74 |
| hrcR | NP_791222.3 | type III secretion protein HrcR | Virulence | Hrp PAI | Protein | 6e-69 | 74 |
| hrcR | ABQ88359.1 | HrcR | Virulence | Hrp PAI | Protein | 2e-69 | 74 |
| hrpW | AAB05075.1 | HrpW | Virulence | Hrp PAI | Protein | 2e-69 | 74 |
| hrcR | ABA47279.1 | HrcR | Virulence | S-PAI | Protein | 2e-71 | 73 |
| hrcR | AAT96262.1 | HrcR | Virulence | S-PAI | Protein | 2e-66 | 72 |
| hrcR | AAT96303.1 | HrcR | Virulence | S-PAI | Protein | 2e-66 | 72 |
| hrcR | AAT96343.1 | HrcR | Virulence | S-PAI | Protein | 2e-66 | 72 |
| hrcR | AAT96146.1 | HrcR | Virulence | T-PAI | Protein | 4e-72 | 71 |
| hrcR | AAT96200.1 | HrcR | Virulence | T-PAI | Protein | 3e-72 | 71 |
| hrcR | AAB06005.2 | HrcR | Virulence | Hrp PAI | Protein | 1e-69 | 66 |
| YPO0270 | YP_002345352.1 | type III secretion system protein | Virulence | Not named | Protein | 3e-41 | 46 |
| escR | NP_290283.1 | type III secretion system protein | Virulence | LEE | Protein | 6e-41 | 44 |
| escR | AAK26700.1 | EscR | Virulence | LEE | Protein | 5e-41 | 44 |
| escR | AAL57527.1 | EscR | Virulence | LEE | Protein | 5e-41 | 44 |
| escR | CAC81847.1 | EscR protein | Virulence | LEE II | Protein | 5e-41 | 44 |
| ECs4583 | NP_312610.1 | type III secretion system protein | Virulence | LEE | Protein | 3e-40 | 44 |
| escR | CAI43889.1 | EscR protein | Virulence | LEE | Protein | 5e-41 | 44 |
| escR | YP_003223490.1 | T3SS structure protein EscR | Virulence | LEE | Protein | 7e-41 | 44 |
| escR | AAC31528.1 | L0049 | Virulence | LEE | Protein | 4e-41 | 44 |
| escR | YP_003232138.1 | type III secretion system protein | Virulence | LEE | Protein | 7e-41 | 44 |
| escR | ACU09473.1 | type III secretion system protein EscR | Virulence | LEE | Protein | 4e-41 | 44 |
| escR | YP_003236103.1 | T3SS structure protein EscR | Virulence | LEE | Protein | 6e-41 | 44 |
| escR | AAC38369.1 | EscR | Virulence | LEE | Protein | 5e-40 | 44 |
| unnamed | AAL06354.1 | EscR | Virulence | LEE | Protein | 3e-40 | 44 |
| lscR | AAO18040.1 | LscR | Virulence | TTSS locus | Protein | 1e-43 | 44 |
| yscR | NP_456109.1 | putative type III secretion protein | Virulence | SPI-2 | Protein | 4e-35 | 43 |
| yscR | NP_805090.1 | type III secretion system protein | Virulence | SPI-2 | Protein | 4e-35 | 43 |
| ssaR | YP_216427.1 | type III secretion system protein | Virulence | SPI-2 | Protein | 3e-35 | 43 |
| ssaR | NP_460384.1 | type III secretion system protein | Virulence | SPI-2 | Protein | 3e-35 | 43 |
| ssaR | CAA68199.1 | secretion system apparatus, SsaR | Virulence | SPI-2 | Protein | 2e-35 | 43 |
| escR | AFO66317.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 4e-38 | 42 |
| escR | AFO66400.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 4e-38 | 42 |
| hrcR | BAB07862.1 | HrcR | Virulence | Hrp PAI | Protein | 2e-33 | 41 |
| hrcR | AAP34349.1 | HrcR | Virulence | Hrp PAI | Protein | 8e-34 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PSEBR_a5382 | YP_004356892.1 | type III secretion protein | VFG0044 | Protein | 2e-46 | 49 |
| PSEBR_a5382 | YP_004356892.1 | type III secretion protein | VFG0188 | Protein | 7e-43 | 44 |
| PSEBR_a5382 | YP_004356892.1 | type III secretion protein | VFG0827 | Protein | 2e-41 | 44 |
| PSEBR_a5382 | YP_004356892.1 | type III secretion protein | VFG0715 | Protein | 2e-40 | 44 |
| PSEBR_a5382 | YP_004356892.1 | type III secretion protein | VFG0394 | Protein | 3e-42 | 44 |
| PSEBR_a5382 | YP_004356892.1 | type III secretion protein | VFG0519 | Protein | 1e-35 | 43 |
| PSEBR_a5382 | YP_004356892.1 | type III secretion protein | VFG2338 | Protein | 1e-28 | 42 |
| PSEBR_a5382 | YP_004356892.1 | type III secretion protein | VFG2016 | Protein | 6e-28 | 42 |
| PSEBR_a5382 | YP_004356892.1 | type III secretion protein | VFG1773 | Protein | 2e-35 | 41 |
