Gene Information

Name : PSEBR_a5382 (PSEBR_a5382)
Accession : YP_004356892.1
Strain : Pseudomonas brassicacearum NFM421
Genome accession: NC_015379
Putative virulence/resistance : Virulence
Product : type III secretion protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 6500710 - 6501363 bp
Length : 654 bp
Strand : -
Note : -

DNA sequence : 
ATGAGCTTCCAGGGGGTCGACCCCTTTCTGTTGGCGCTGTTCATTGGTGGGATTTCGCTGGTCCCCTTGCTGCTGATCAT
CTGCAGCGCCTTTCTCAAGATAGCCATTGTGTTGACCATCACCCGTAACGCCATCGGCGTGCAGCAGGTGCCACCCAATA
TGGCCTTGTATGCCATTGCCCTGGCCGCGACGCTGTTCATCATGGCGCCGGTGGGCCACAACATCGCCGAACAGGTGAAA
GAACGGCCGTTGGATTTCAGCAATACCGAGGCGTTGCAAGGCTCTGCCTTGAACGCGATAAAACCGTTGCAGGCCTTCAT
GTCGCGCAATACCAACCCGGACATCCTCGCCCACTTGCTGGAAAACACCCAGCGGATGTGGCCCAAGGAACGCGCCGAGC
AGGCCAGCCGCGATGACCTGATGCTGCTCATCCCGGCCTTCATGTTGTCGGAGCTCGAGGCCGGTTTCCAGATGGGATTC
CTGATCTATATCCCGTTCATTGTCATCGACCTGATCGTGTCCAACCTGCTGCTGGCGCTCGGCATGCAGATGGTCGCGCC
CATGACCATTTCGTTGCCGCTCAAGCTGCTGATTTTTGTCCTCGTGCAGGGCTGGACGCAATTGCTCGACAGCCTCTTCT
ATTCCTATCTTTGA

Protein sequence : 
MSFQGVDPFLLALFIGGISLVPLLLIICSAFLKIAIVLTITRNAIGVQQVPPNMALYAIALAATLFIMAPVGHNIAEQVK
ERPLDFSNTEALQGSALNAIKPLQAFMSRNTNPDILAHLLENTQRMWPKERAEQASRDDLMLLIPAFMLSELEAGFQMGF
LIYIPFIVIDLIVSNLLLALGMQMVAPMTISLPLKLLIFVLVQGWTQLLDSLFYSYL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 6e-72 74
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 6e-69 74
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 2e-69 74
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 2e-69 74
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 2e-71 73
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 2e-66 72
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 2e-66 72
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 2e-66 72
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 4e-72 71
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 3e-72 71
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 1e-69 66
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 3e-41 46
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 6e-41 44
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 4e-41 44
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 6e-41 44
escR AAK26700.1 EscR Virulence LEE Protein 5e-41 44
escR AAL57527.1 EscR Virulence LEE Protein 5e-41 44
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 3e-40 44
escR CAC81847.1 EscR protein Virulence LEE II Protein 5e-41 44
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 7e-41 44
escR CAI43889.1 EscR protein Virulence LEE Protein 5e-41 44
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 7e-41 44
escR AAC31528.1 L0049 Virulence LEE Protein 4e-41 44
escR AAC38369.1 EscR Virulence LEE Protein 5e-40 44
unnamed AAL06354.1 EscR Virulence LEE Protein 3e-40 44
lscR AAO18040.1 LscR Virulence TTSS locus Protein 1e-43 44
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 4e-35 43
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 4e-35 43
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 3e-35 43
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 3e-35 43
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 2e-35 43
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 4e-38 42
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 4e-38 42
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 2e-33 41
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 8e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSEBR_a5382 YP_004356892.1 type III secretion protein VFG0044 Protein 2e-46 49
PSEBR_a5382 YP_004356892.1 type III secretion protein VFG0188 Protein 7e-43 44
PSEBR_a5382 YP_004356892.1 type III secretion protein VFG0827 Protein 2e-41 44
PSEBR_a5382 YP_004356892.1 type III secretion protein VFG0715 Protein 2e-40 44
PSEBR_a5382 YP_004356892.1 type III secretion protein VFG0394 Protein 3e-42 44
PSEBR_a5382 YP_004356892.1 type III secretion protein VFG0519 Protein 1e-35 43
PSEBR_a5382 YP_004356892.1 type III secretion protein VFG2338 Protein 1e-28 42
PSEBR_a5382 YP_004356892.1 type III secretion protein VFG2016 Protein 6e-28 42
PSEBR_a5382 YP_004356892.1 type III secretion protein VFG1773 Protein 2e-35 41