Gene Information

Name : PSEBR_a5381 (PSEBR_a5381)
Accession : YP_004356891.1
Strain : Pseudomonas brassicacearum NFM421
Genome accession: NC_015379
Putative virulence/resistance : Virulence
Product : type III secretion protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4794
EC number : -
Position : 6500446 - 6500700 bp
Length : 255 bp
Strand : -
Note : -

DNA sequence : 
ATGGACGCGCTGACGTTGTTTAAGGAAGGCATGTTGCTGGTGGTCCTGCTCTCCGCGCCGCCCTTGATCGTGGCGGTGAT
TGTCGGTGTGCTGACCTCCCTGGTGCAGGCCTTGATGCAGATCCAGGACCAGACCTTGCCCTTCGGCATCAAGCTGGTGG
CGGTCGGGTTGACCTTGCTGGTCACGGGGCGCTGGATCGGCGTGGAGTTGCTGGGACTGCTGCGCCGGGCATTCGAAATG
ATGGCCAACACCTGA

Protein sequence : 
MDALTLFKEGMLLVVLLSAPPLIVAVIVGVLTSLVQALMQIQDQTLPFGIKLVAVGLTLLVTGRWIGVELLGLLRRAFEM
MANT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcS AAB06006.1 HrcS Virulence Hrp PAI Protein 5e-20 73
hrcS AAT96147.1 HrcS Virulence T-PAI Protein 2e-19 72
hrcS AAT96201.1 HrcS Virulence T-PAI Protein 2e-19 72
hrcS ABQ88360.1 HrcS Virulence Hrp PAI Protein 1e-15 72
hrpO AAB05076.1 HrpO Virulence Hrp PAI Protein 1e-15 72
hrcS AAG33885.1 HrcS Virulence Hrp PAI Protein 2e-19 71
hrcS NP_791221.1 type III secretion protein HrcS Virulence Hrp PAI Protein 3e-19 71
hrcS AAT96344.1 HrcS Virulence S-PAI Protein 2e-18 70
hrcS ABA47280.1 HrcS Virulence S-PAI Protein 2e-18 70
hrcS AAT96263.1 HrcS Virulence S-PAI Protein 2e-18 70
hrcS AAT96304.1 HrcS Virulence S-PAI Protein 2e-18 70
lscS AAO18039.1 LscS Virulence TTSS locus Protein 2e-07 49
ssaS YP_216428.1 secretion system apparatus protein SsaS Virulence SPI-2 Protein 0.007 49
ssaS NP_460385.1 type III secretion system apparatus protein Virulence SPI-2 Protein 0.007 49
ssaS NP_456108.1 putative type III secretion protein Virulence SPI-2 Protein 0.006 49
ssaS CAA68200.1 secretion system apparatus, SsaS Virulence SPI-2 Protein 0.005 49
ssaS NP_805091.1 type III secretion protein Virulence SPI-2 Protein 0.006 49
spaQ YP_217808.1 surface presentation of antigens; secretory proteins Virulence SPI-1 Protein 1e-05 47
spaQ NP_457283.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 1e-05 47
spaQ NP_806492.1 virulence-associated secretory protein Virulence SPI-1 Protein 1e-05 47
spaQ NP_461810.1 needle complex export protein Virulence SPI-1 Protein 1e-05 47
spaQ AAS66866.1 SpaQ Not tested SSR-2 Protein 8e-07 47
ysaS AAS66847.1 YsaS Not tested SSR-1 Protein 5e-06 46
escS AAL57528.1 EscS Virulence LEE Protein 1e-06 42
escS YP_003223489.1 T3SS structure protein EscS Virulence LEE Protein 2e-06 42
escS CAC81848.1 EscS protein Virulence LEE II Protein 1e-06 42
escS YP_003232139.1 T3SS structure protein EscS Virulence LEE Protein 2e-06 42
escS AAK26701.1 EscS Virulence LEE Protein 1e-06 42
escS AFO66341.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-06 41
escS AFO66401.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-06 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSEBR_a5381 YP_004356891.1 type III secretion protein VFG0395 Protein 9e-08 58
PSEBR_a5381 YP_004356891.1 type III secretion protein VFG0520 Protein 0.002 49
PSEBR_a5381 YP_004356891.1 type III secretion protein VFG0550 Protein 4e-06 47
PSEBR_a5381 YP_004356891.1 type III secretion protein VFG0043 Protein 3e-08 46
PSEBR_a5381 YP_004356891.1 type III secretion protein VFG2454 Protein 4e-04 44