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Name : PSEBR_a5379 (PSEBR_a5379) Accession : YP_004356889.1 Strain : Pseudomonas brassicacearum NFM421 Genome accession: NC_015379 Putative virulence/resistance : Virulence Product : type III secretion protein, membrane protein Function : - COG functional category : N : Cell motility COG ID : COG1377 EC number : - Position : 6498533 - 6499633 bp Length : 1101 bp Strand : - Note : - DNA sequence : ATGAGCGAAGACAGTGGAGAAAAGACCAAGCGGGCGACGCCGAAGAAGATTCGCGACGCGCGCAACAAGGGCCAGGTCGG CCAAAGCCAGGACTTGAGCAGCCTGCTGGTGCTTGCGGCGATCACCGAAGTGGCGTTGACCCAGGCCGACGACAGCATGC AGGCCTTGGGAGACATGGTGACATTCCCGCTGCATCGGCTGGATGTCGATTTCGTGCGTGCCTTCGAGGAGACCTTGGCT CATGCCGGTGGCGTGTTGCTCAATTTCACCTTGATGACCGTGGGGTTGGCGATCGTCACGCGCCTGGTGGCCGGTTGGAT ACAGTTCGGTTTCCTGTTTGCCCCCGAGGCCCTTCAGCCCGACCCGAACCGCTTGAACCCGATGAACCAGGCCAAGCAGA TGTTCTCCGGCCAGGCGCTGATCAACCTGTTCATGGGGCTGGTCAAGGCCGTGTTTATCGGCACCGTGATTTATCTGGTG ACCCTGCCTGCACTCGGGTCGTTGATCAATCTGGTCAACGGCGACCTGAACAGCTATTGGCGCGGGCTGGCCAGCCTGTT TCGGCACATCATGCACATCTGCCTGGGCGTGTTGCTGGTGCTGGCGCTTCTCGACTTCGGCCTGCAGAAATATTTCTTCG CCAAGCGCCTGCGCATGAGCGAGGAAGAGGTGCGCAAGGAGTTCAAGGAAATGGAAGGCGACCCCCACGTAAAAATGCAT CGCCGCAGCCTGGCCCGGCAATTGGTCGACCAGCCCGTCAACAAAGAGACCAAACCGGTGGAAGACGCCGACATGCTGGT GGTCAACCCCACCCACTTTGCCGTCGCGCTGTTGTATCGCCCCGAGGAAACGCCGCTGCCGCAGTTGATCGTCAAAGGTG TCGATGCCGAGGCCCGGGCGCTGATCGAGCGGGCCAAGGTGGCGCGGGTTCCGGTTATCCAGTGCATCTGGCTGGCGCGC ACGATCTACCGTGAAGACGTCGGCGCCTATATCCCTCGGGAAACGCTCCAGGCGGTTGCCCACATTTATCGGGTGTTGCG CGAACTGGATGACGAGGCCAAGGGCGAGGTCATCGAGATTCCGGAGTTGAACCAGCGTTGA Protein sequence : MSEDSGEKTKRATPKKIRDARNKGQVGQSQDLSSLLVLAAITEVALTQADDSMQALGDMVTFPLHRLDVDFVRAFEETLA HAGGVLLNFTLMTVGLAIVTRLVAGWIQFGFLFAPEALQPDPNRLNPMNQAKQMFSGQALINLFMGLVKAVFIGTVIYLV TLPALGSLINLVNGDLNSYWRGLASLFRHIMHICLGVLLVLALLDFGLQKYFFAKRLRMSEEEVRKEFKEMEGDPHVKMH RRSLARQLVDQPVNKETKPVEDADMLVVNPTHFAVALLYRPEETPLPQLIVKGVDAEARALIERAKVARVPVIQCIWLAR TIYREDVGAYIPRETLQAVAHIYRVLRELDDEAKGEVIEIPELNQR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcU | AAT96265.1 | HrcU | Virulence | S-PAI | Protein | 2e-86 | 58 |
| hrcU | AAT96346.1 | HrcU | Virulence | S-PAI | Protein | 1e-86 | 58 |
| hrcU | AAT96306.1 | HrcU | Virulence | S-PAI | Protein | 3e-86 | 58 |
| hrcU | ABA47282.1 | HrcU | Virulence | S-PAI | Protein | 2e-86 | 57 |
| hrcU | ABQ88362.1 | HrcU | Virulence | Hrp PAI | Protein | 2e-86 | 56 |
| hrpY | AAB05078.1 | HrpY | Virulence | Hrp PAI | Protein | 2e-86 | 56 |
| hrcU | AAT96149.1 | HrcU | Virulence | T-PAI | Protein | 3e-87 | 56 |
| hrcU | AAT96203.1 | HrcU | Virulence | T-PAI | Protein | 3e-87 | 56 |
| hrcU | NP_791219.1 | type III secretion protein HrcU | Virulence | Hrp PAI | Protein | 3e-80 | 54 |
| hrcU | AAB06008.1 | HrcU | Virulence | Hrp PAI | Protein | 1e-77 | 54 |
| hrcU | AAC35808.1 | hrp type III pathway protein | Virulence | Hrp PAI | Protein | 4e-71 | 54 |
| hrcU | AAG33887.1 | HrcU | Virulence | Hrp PAI | Protein | 6e-65 | 52 |
