Gene Information

Name : PSEBR_a5370 (PSEBR_a5370)
Accession : YP_004356878.1
Strain : Pseudomonas brassicacearum NFM421
Genome accession: NC_015379
Putative virulence/resistance : Virulence
Product : type III secretion protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4669
EC number : -
Position : 6491188 - 6492075 bp
Length : 888 bp
Strand : +
Note : -

DNA sequence : 
ATGTCCATGCGCGCATTCTCAACACTGTTGCTGTGTCTGCTGCTCACCGGTTGCGATGAACGGACGGCGCTGCACAGCCA
TCTTTCCGAGCAGGATGCCAACGAAGTGATCGCCGAATTGGCGAACAAGAACGTGGAAGCGAGCAAGCAGGTCGATAAAG
ACGGGCTGACCGTACTGGTCGAGCCTGCCGACATGAACAGCGCCGTCCAGGTACTCGAGGCCGCCGGCCTGCCGCGTCGC
TCACGCTCCAGCCTGGGGGAGATCTTCCGCAAGGAAGGGGTCATTTCCACGCCGATGGAAGAACGTGCCCGCTACATCTA
TGCGCTGTCCCAGGAGCTCGAATCGACGCTTTCACAAATAGACGGCGTGGTGCTCGCCCGGGTCCATGTGGTCCTGCCGG
AACGGGTGGCCCCGGGTGAGCCGGTCCAACCCGCATCGGCCTCGGTGTTTATCAAGCACACCAATGCCCTGGACCCCGAC
AGCATTACCCCGCGCGTGCGCAACCTGGTCGCCAGCGGGATCCCCGGCATGGCCGATGCTACCCAGAACCCGACCAAATT
ATCGGTGGTCTTCGTTCCCGCCGCACCGTATCAGGAGCGGCGCAAGATGGCGTATTTCGGCCCGTTCCTCATGCAGGCCG
ACGACATCGGCTATTGGCGGGCGGTGACCGTGACGGCAAGCATCACCTTGCTTGCCATCCTGATGGGCGTCTTGTATGGC
CTCTACCGGCTATGGCGCCAAGGCGTGTTAGTGCTGCCACGACTTCTCGATCGCAAGTTCAGCAAACCAGCCAGGACGCC
CGCCGCCCCCCAAAGCAGCGCGACACCTGGGCTGTTCGCCGTGAAAAACCCGGGGACCAAACCCGACAGTAACGGGACCG
CCGCATGA

Protein sequence : 
MSMRAFSTLLLCLLLTGCDERTALHSHLSEQDANEVIAELANKNVEASKQVDKDGLTVLVEPADMNSAVQVLEAAGLPRR
SRSSLGEIFRKEGVISTPMEERARYIYALSQELESTLSQIDGVVLARVHVVLPERVAPGEPVQPASASVFIKHTNALDPD
SITPRVRNLVASGIPGMADATQNPTKLSVVFVPAAPYQERRKMAYFGPFLMQADDIGYWRAVTVTASITLLAILMGVLYG
LYRLWRQGVLVLPRLLDRKFSKPARTPAAPQSSATPGLFAVKNPGTKPDSNGTAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcJ ABA47308.1 HrcJ Virulence S-PAI Protein 7e-65 64
hrcJ NP_791211.1 type III secretion protein HrcJ Virulence Hrp PAI Protein 4e-64 59
hrpC AAB00129.1 HrpC Virulence Hrp PAI Protein 3e-64 59
hrcJ AAB49174.1 HrcJ Virulence Hrp PAI Protein 3e-59 56