Gene Information

Name : PSEBR_a4828 (PSEBR_a4828)
Accession : YP_004356251.1
Strain : Pseudomonas brassicacearum NFM421
Genome accession: NC_015379
Putative virulence/resistance : Virulence
Product : type 4 prepilin-like protein
Function : -
COG functional category : N : Cell motility
COG ID : COG1989
EC number : -
Position : 5853880 - 5854749 bp
Length : 870 bp
Strand : +
Note : -

DNA sequence : 
ATGCCCCTGAGCGAATTCTTCGTGCTGTATCCCCTGGCTTTCGTGCTCGTTGCAGCATTGCTCGGCCTGATCATCGGCAG
CTTCCTCAACGTGCTGGTGTGGCGCCTGCCGAAGATGCTCAACCGCGAATGGCGCCTGCAGGCCCACGACCTGCTGGGCC
TGCCGGCCGAAACCCCGGGCCCGGTCTACAACCTGATGCTGCCCCACTCCCAGTGCCCGCACTGCGGCCATCGCATCCGC
GCCTGGGAAAACATTCCGCTGCTCAGCTACCTGATACTGCGCGGCCGCTGTTCGAGCTGCGCCGCGCCCATCGGCAGGCG
TTACCCCCTGACCGAATTGGCCTGCGGCGCGTTATCGGCGTTCGTCGCCTGGCATTTCGGTTTTGGCTGGCACGCCGCGA
TGGTGATGGTGTTGACCTGGGGCCTGCTGGCCATGAGCCTGATCGACGCCGAGCATCAATTGCTGCCCGATACCCTGGTG
CTGCCGCTGTTGTGGCTGGGCTTGATCATCAACAGCTTCGGGCTCTTCGTGTCCTTGAACCAGGCGATGTGGGGCGCGGT
GGCCGGCTACCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTATGGGGATT
TCAAGCTGCTGGCGATGCTCGGCGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACGCTGCTGCTGTCGTCGTTGCTGGGC
GCCGTTATTGGGGCGATTGTGCTGCGCTTGCGTGATGCCCCGGGGTCGACGCAGATCCCCTTTGGACCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTTTAA

Protein sequence : 
MPLSEFFVLYPLAFVLVAALLGLIIGSFLNVLVWRLPKMLNREWRLQAHDLLGLPAETPGPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLILRGRCSSCAAPIGRRYPLTELACGALSAFVAWHFGFGWHAAMVMVLTWGLLAMSLIDAEHQLLPDTLV
LPLLWLGLIINSFGLFVSLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLLG
AVIGAIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAE85237.1 putative prepilin peptidase A Not tested PAI V 536 Protein 2e-21 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSEBR_a4828 YP_004356251.1 type 4 prepilin-like protein VFG0114 Protein 2e-80 72
PSEBR_a4828 YP_004356251.1 type 4 prepilin-like protein VFG1882 Protein 2e-46 50
PSEBR_a4828 YP_004356251.1 type 4 prepilin-like protein VFG0234 Protein 2e-40 50
PSEBR_a4828 YP_004356251.1 type 4 prepilin-like protein VFG2428 Protein 4e-35 50