Gene Information

Name : PSEBR_a4490 (PSEBR_a4490)
Accession : YP_004355906.1
Strain : Pseudomonas brassicacearum NFM421
Genome accession: NC_015379
Putative virulence/resistance : Virulence
Product : two-component response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 5458347 - 5459672 bp
Length : 1326 bp
Strand : +
Note : -

DNA sequence : 
ATGCTTGATTCAGTCATGGTCGTTGATGACGAAGGCAGCATTCGCAGCGCCGTCGAGCAATGGTTGAGCCTGTCGGGGTT
TCAGGTGCAGTTGTTCAGCCGCGCCGATGAATGCCTGGCCCGGTTGCCGGAGCATTTCCCTGGAGTGATCCTCAGCGATG
TGCGCATGCCCGGCCTCAGTGGCCTGGAGCTGTTGGCCGAAGTGCGCCGCCGCGATCCGGACCTGCCGGTGATTCTGTTG
ACCGGCCACGGCGACGTGCCGATGGCCGTGGAGGCCATGCGCGACGGCGCCTACGACTTCCTGGAAAAACCCTTCAGCCC
CGAAGCCCTGCTCGGCAGCCTGCGCCGGGCCCTGGACAAACGCACCCTGGTCCTGGAAAACCGTCGCTTGCATGAACAGG
CCGACGCCCGGGTCCGCCTCGATGGCACGCTGCTGGGCGTTTCCCGTGCGTTGCAAAACCTGCGGCGCCAGGTGCTGGAC
CTGGCCGCACTGCCGGTCAACGTGTTGATCCGCGGCGAAACCGGCAGCGGCAAGGAACTGGTCGCCCGCTGCCTGCACGA
CTTCGGCCCGAGGGCGAGCAAGCCCTTCGTCGCGTTGAACTGCGCGGCCATTCCCGAGGCGCTGTTCGAAGCGGAGCTGT
TCGGCCACGAAAGCGGCGCCTTCACCGGCGCCCAGGGCAAGCGCATCGGCAAGCTCGAATACGCCGATGGCGGCACGCTG
TTTCTCGACGAAATCGAGAGCATGCCCCTGGCCCAGCAGGTCAAGTTGCTGCGGGTGTTGCAGGAACAGAAACTCGAACG
CCTGGGCTCCAACCAGAGCATCCAGGTGGACCTGCGCATCATCGCCGCCACCAAGCCCGACCTGCTGGACGAAGCCCGGG
CCGGACGTTTTCGCGAAGACCTGGCCTATCGCCTGAACATCGCCGAACTGCGCCTGCCACCGCTGCGCGAACGGCGCGAG
GACATTCCCCTGCTGTTCGAACACTTCACCCACAGCGCCGCCGAACGCCTGGGCCGCTCCGCCGCGCCCCTGAGCGGCCC
GCAGTTGAGCCATCTGCTCAGCCACGACTGGCCGGGCAACGTGCGTGAGCTGGCCAACGTCGCCGAACGCCAGGTGTTGG
GGCTTGATCAACTGCCCGTCCTGGAGACGGAGCCGGGCCAATCCCTCGCGGCCCAACAGGAAGCCTTCGAAGCCCAATGC
CTGCGCGCCGCCCTGACCCGGCACAAAGGCGATGTGAAAGCCGTGCTTGAGGAACTGCAACTGCCGCGCCGCACCTTCAA
TGAAAAGATGCAGCGGCATGGGTTGAGTCGGGAGATGTTTTTGTAA

Protein sequence : 
MLDSVMVVDDEGSIRSAVEQWLSLSGFQVQLFSRADECLARLPEHFPGVILSDVRMPGLSGLELLAEVRRRDPDLPVILL
TGHGDVPMAVEAMRDGAYDFLEKPFSPEALLGSLRRALDKRTLVLENRRLHEQADARVRLDGTLLGVSRALQNLRRQVLD
LAALPVNVLIRGETGSGKELVARCLHDFGPRASKPFVALNCAAIPEALFEAELFGHESGAFTGAQGKRIGKLEYADGGTL
FLDEIESMPLAQQVKLLRVLQEQKLERLGSNQSIQVDLRIIAATKPDLLDEARAGRFREDLAYRLNIAELRLPPLRERRE
DIPLLFEHFTHSAAERLGRSAAPLSGPQLSHLLSHDWPGNVRELANVAERQVLGLDQLPVLETEPGQSLAAQQEAFEAQC
LRAALTRHKGDVKAVLEELQLPRRTFNEKMQRHGLSREMFL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpR ABQ88368.1 HrpR Virulence Hrp PAI Protein 4e-44 43
hrpR AAA17651.1 positive regulatory factor Not tested Hrp PAI Protein 4e-44 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSEBR_a4490 YP_004355906.1 two-component response regulator BAC0089 Protein 2e-59 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSEBR_a4490 YP_004355906.1 two-component response regulator VFG1214 Protein 2e-52 46
PSEBR_a4490 YP_004355906.1 two-component response regulator VFG1249 Protein 2e-58 45
PSEBR_a4490 YP_004355906.1 two-component response regulator VFG0116 Protein 2e-43 44