Gene Information

Name : PSEBR_a4372 (PSEBR_a4372)
Accession : YP_004355785.1
Strain : Pseudomonas brassicacearum NFM421
Genome accession: NC_015379
Putative virulence/resistance : Virulence
Product : OmpR family response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 5316731 - 5317414 bp
Length : 684 bp
Strand : -
Note : -

DNA sequence : 
ATGCGAATTCTATTGGTCGAAGACAACCGCGATATCCTGGCCAACCTGGCCGATTACCTGGGGCTCAAGGGTTACACCGT
CGATTGCGCCCAGGACGGTTTGTCGGGATTGCACCTGGCCGCGACCGAACACTACGACCTGATCGTGCTCGACATCATGC
TGCCGGGCATCGACGGCTACACCTTGTGCAAGCGCCTGCGCGAAGACGCCCGGCTCGATACGCCGGTGATCATGCTGACC
GCCCGGGACCAGTTGGACGATCGGCTGCAGGGCTTCAAGTCCGGGGCCGATGACTACCTGATCAAACCGTTTGCCCTGTC
GGAGCTGGCGGCGCGGATCGAAGCCGTCATGCGTCGGTCCCAGGGTGGTGGCCGCCGTGCCTTGCAGGTCGGCGACCTGA
GCTACGACCTCGACACCCTGGAAGTGACGCGTGAAGGCAAGCTGCTCAAGCTCAACCCCGTAGGCCTCAAGCTGCTGGCG
GTATTGATGCAGAAAAGCCCTCACGTGCTGCGCCGCGAAATCCTCGAAGAAGCGTTGTGGGGCGATGATTGCCCGGACAG
CGACAGCCTGCGCAGCCACGTCCATCAACTGCGCCAAGTGATCGACAAGCCGTTCGACAAGCCGTTGTTGCACACGGTAC
ACGGCGTCGGCTATCGCTTGGCCGAGGGCCGCGATGGAGTTTAA

Protein sequence : 
MRILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYTLCKRLREDARLDTPVIMLT
ARDQLDDRLQGFKSGADDYLIKPFALSELAARIEAVMRRSQGGGRRALQVGDLSYDLDTLEVTREGKLLKLNPVGLKLLA
VLMQKSPHVLRREILEEALWGDDCPDSDSLRSHVHQLRQVIDKPFDKPLLHTVHGVGYRLAEGRDGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSEBR_a4372 YP_004355785.1 OmpR family response regulator BAC0487 Protein 1e-29 41
PSEBR_a4372 YP_004355785.1 OmpR family response regulator BAC0125 Protein 3e-34 41
PSEBR_a4372 YP_004355785.1 OmpR family response regulator BAC0197 Protein 6e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSEBR_a4372 YP_004355785.1 OmpR family response regulator VFG0596 Protein 5e-33 41