Gene Information

Name : PSEBR_a4277 (PSEBR_a4277)
Accession : YP_004355690.1
Strain : Pseudomonas brassicacearum NFM421
Genome accession: NC_015379
Putative virulence/resistance : Virulence
Product : OmpR family response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 5203837 - 5204514 bp
Length : 678 bp
Strand : -
Note : -

DNA sequence : 
ATGAAATTACTGGTCGTCGAAGACGAAGCGCTGTTGCGCCACCACCTGCAAACCCGTCTCACCGACAGCGGCCATGTGGT
GCAGGCCGTGGCCAATGCCGAAGAGGCCTTGTACCAGGTCCGGGAATTCAACCATGACCTGGCGGTGATCGACCTGGGCC
TGCCGGGCATCAGCGGGCTGGAACTGATCCGCCGGCTGCGCTCGCAGGACAAGACGTTTCCGATCCTGATCCTCACCGCC
CGCGGCAACTGGCAGGACAAGGTCGAAGGCCTGGCCGCCGGTGCCGACGACTATGTGGTCAAGCCGTTTCAGTTCGAAGA
GCTGGAGGCCCGGCTGAATGCCCTGTTGCGCCGCTCCAGTGGCTTTACCCAATCGACCATTGTTGCCGGTCCGTTGCTGC
TCGACCTCAACCGCAAGCAGGCGTCCCTCGGCGAGGAGCCGCTGGCGTTGACTGCCTACGAATATCGCATCCTCGAATAC
CTCATGCGCCATCACCAGCAGGTGGTGGCCAAGGACCGCTTGATGGAGCAGCTTTACCCCGATGACGACGAGCGTGATCC
CAATGTCATCGAAGTGCTGGTCGGGCGCCTGCGCCGTAAGCTGGAAGCCCCGGCCGGCTTCAAGCCCATCGACACCGTGC
GTGGCCTGGGCTACCTGTTCAACGAGCGCTGCCAGTGA

Protein sequence : 
MKLLVVEDEALLRHHLQTRLTDSGHVVQAVANAEEALYQVREFNHDLAVIDLGLPGISGLELIRRLRSQDKTFPILILTA
RGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSSGFTQSTIVAGPLLLDLNRKQASLGEEPLALTAYEYRILEY
LMRHHQQVVAKDRLMEQLYPDDDERDPNVIEVLVGRLRRKLEAPAGFKPIDTVRGLGYLFNERCQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 7e-21 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSEBR_a4277 YP_004355690.1 OmpR family response regulator NC_002516.2.879194.p Protein 6e-84 86
PSEBR_a4277 YP_004355690.1 OmpR family response regulator CP001138.1.gene1939. Protein 1e-50 55
PSEBR_a4277 YP_004355690.1 OmpR family response regulator CP000647.1.gene1136. Protein 9e-50 54
PSEBR_a4277 YP_004355690.1 OmpR family response regulator CP001918.1.gene2526. Protein 7e-50 54
PSEBR_a4277 YP_004355690.1 OmpR family response regulator CP000034.1.gene2022. Protein 3e-50 54
PSEBR_a4277 YP_004355690.1 OmpR family response regulator BAC0530 Protein 6e-50 54
PSEBR_a4277 YP_004355690.1 OmpR family response regulator NC_002695.1.913289.p Protein 4e-49 53
PSEBR_a4277 YP_004355690.1 OmpR family response regulator CP004022.1.gene1005. Protein 2e-47 50
PSEBR_a4277 YP_004355690.1 OmpR family response regulator BAC0083 Protein 2e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSEBR_a4277 YP_004355690.1 OmpR family response regulator VFG0475 Protein 1e-50 55