Gene Information

Name : PSEBR_a3362 (PSEBR_a3362)
Accession : YP_004354686.1
Strain : Pseudomonas brassicacearum NFM421
Genome accession: NC_015379
Putative virulence/resistance : Virulence
Product : OmpR family response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4152240 - 4152923 bp
Length : 684 bp
Strand : +
Note : -

DNA sequence : 
ATGAACCGCATCCTGACCATCGAAGACGACGCCGTGACCGCCCGTGAAATCGTCGCCGAGCTGACCCGCAACGGCCTGGA
CGTCGATTGGGTCGACAACGGCCGCGAAGGCCTGGAACGGGCGGTGAGCGGCGACTACGACCTGATAACCCTCGACCGCA
TGCTGCCCGAGCTCGACGGCCTGGTGATCGTCACCACGCTGCGCACCATGGGCGTGGCCACGCCGATCCTGATGATCAGC
GCCCTCTCCGACGTGGACGAGCGGGTCCGTGGCCTGCGGGCCGGCGGCGATGATTACCTGACCAAGCCGTTCGCCACCGA
CGAAATGGCCGCCCGGGTCGAAGTGCTGCTGCGGCGCAACAATGGCGCCCGCGAGCCGGAAACCGTGCTGCGGGTAGCCG
ATCTGGAGCTGAACCTGATCAGCCGCGAAGCCAGCCGCAACGGGCAACTGCTCAGCCTGCTGCCCACCGAATACAAGCTG
CTCGAATTCCTGATGCGCAACAGTGGGCAGATCCTCTCGCGCATGATGATTTTCGAGGAAGTCTGGGGCTATCACTTCGA
CCCCGGCACCAACCTGATCGATGTCCACATCGGCCGCCTGCGCAAGAAAATCGACCCGCCGGGCCTGGAACCGCTGATTC
GCACGGTACGGGGTTCCGGCTATGTCATTGCTGAACCCTGCTAA

Protein sequence : 
MNRILTIEDDAVTAREIVAELTRNGLDVDWVDNGREGLERAVSGDYDLITLDRMLPELDGLVIVTTLRTMGVATPILMIS
ALSDVDERVRGLRAGGDDYLTKPFATDEMAARVEVLLRRNNGAREPETVLRVADLELNLISREASRNGQLLSLLPTEYKL
LEFLMRNSGQILSRMMIFEEVWGYHFDPGTNLIDVHIGRLRKKIDPPGLEPLIRTVRGSGYVIAEPC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-31 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-31 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSEBR_a3362 YP_004354686.1 OmpR family response regulator BAC0197 Protein 2e-41 47
PSEBR_a3362 YP_004354686.1 OmpR family response regulator BAC0111 Protein 3e-42 46
PSEBR_a3362 YP_004354686.1 OmpR family response regulator BAC0308 Protein 4e-41 45
PSEBR_a3362 YP_004354686.1 OmpR family response regulator BAC0347 Protein 8e-40 45
PSEBR_a3362 YP_004354686.1 OmpR family response regulator BAC0125 Protein 4e-39 45
PSEBR_a3362 YP_004354686.1 OmpR family response regulator HE999704.1.gene1528. Protein 4e-30 42
PSEBR_a3362 YP_004354686.1 OmpR family response regulator BAC0083 Protein 4e-40 42
PSEBR_a3362 YP_004354686.1 OmpR family response regulator BAC0638 Protein 4e-33 42
PSEBR_a3362 YP_004354686.1 OmpR family response regulator NC_012469.1.7686381. Protein 2e-39 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSEBR_a3362 YP_004354686.1 OmpR family response regulator VFG1390 Protein 2e-37 43
PSEBR_a3362 YP_004354686.1 OmpR family response regulator VFG0596 Protein 4e-32 43
PSEBR_a3362 YP_004354686.1 OmpR family response regulator VFG1389 Protein 4e-32 42