Gene Information

Name : PSEBR_a3292 (PSEBR_a3292)
Accession : YP_004354611.1
Strain : Pseudomonas brassicacearum NFM421
Genome accession: NC_015379
Putative virulence/resistance : Unknown
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : R : General function prediction only
COG ID : COG4172
EC number : -
Position : 4071570 - 4073180 bp
Length : 1611 bp
Strand : +
Note : -

DNA sequence :
ATGAACCAGGACAATCTGATCGAAGTACGCGACCTGGCGGTGGAGTTCATTGTCGGCGAACGCCGCCAGCGCGTGGTCGA
GGGGGTCAGCTTCGATATCAAGCGCGGCGAAACCCTGGCCCTGGTGGGTGAAAGCGGCTCGGGCAAATCGGTTACCGCCC
ATTCGATCCTGCGGTTGCTGCCTTACCCGCTGGCCCATCACCCCACCGGGACCATCCAGTACGCCGGCCAGAATTTGCTG
GGTTTGAAGGAAAAAACCATCCGTCATATCCGCGGCAACCGGATCGCGATGATTTTCCAGGAGCCGATGACATCCCTCAA
CCCGCTGCACTCCATTGAAAAACAGATCAATGAAGTGCTCGGCATCCACAAGGGCCTGAGCGGCAAGGTCGCGACCCGCC
GGACCCTTGAGTTGCTGGAGCTGGTTGGCATTCCCGAACCCCACAAGCGCCTCAAGGCCCTGCCCCACGAGCTATCCGGC
GGCCAGCGCCAGCGGGTGATGATCGCCATGGCCCTGGCCAACGAGCCGGAACTGCTGATTGCCGACGAGCCGACCACCGC
GCTGGACGTCACCGTCCAGTTGAAAATCCTCCAATTGCTCAAGGAATTGCAGGCGCGATTGGGCATGTCGCTGCTGCTGA
TCAGCCACGATTTGAACCTGGTGCGAAGAATTGCGCATCGCGTATGTGTCATGCAGCGCGGTTGCATCGTCGAACAGGCA
TCGTGCGAAGAGTTGTTCCGGGCACCGCAGCATCCGTACACTCGGGAACTGCTGGGCGCTGAACCCAGCGGCACCCCGGC
GAGCAACGTCGTCGGCCCGCCGCTGTTGCAGGTCGAGGACCTGAAAGTCTGGTTCCCGATCAAGAAAGGCCTGTTCAAGC
GCACGGTAGACTACATCAAGGCCGTGGACGGTATCCGCTTCAGCCTGCCCCAGGGCCAGACCCTGGGCATCGTCGGCGAA
AGCGGTTCCGGCAAATCCACCCTGGGGCTGGCAATCCTGCGGTTGATCGGCAGCCAGGGCGGGATCCGTTTCGAAGGCAA
GCAGCTGGATAGCCTGACGCAGCAACAAGTCCGGCCGCTACGCCGGGAGATGCAAGTGGTGTTTCAGGACCCGTTTGGCA
GCCTGAGCCCACGGATGTGTGTGAGCCAGATCGTCGGCGAAGGCCTGCGGATCCACAAGATCGGCACCGAAGCCGAACAG
GAACAAGCGATAATAGCGGCATTGAAGGAGGTAGGCCTGGACCCGGAAACCCGGAACCGCTACCCCCATGAATTTTCCGG
AGGGCAACGGCAGCGTATCGCCATTGCCCGGGCCCTGGTGCTCAAGCCGGCGTTGATTCTGCTGGATGAACCGACGTCGG
CCCTGGACCGTACCGTGCAACGCCAAGTGGTGGAGCTGTTGCGGTCGTTGCAAACCAAGTACAACCTGACGTACCTGTTT
ATCAGCCATGACCTGGCTGTCGTCAAAGCGCTGAGCCACCAGTTGATGGTGGTCAAGCATGGCCAAGTGGTCGAACAAGG
TGATGCCCGCAGCATATTCGCCGCGCCGCAGCACCCCTATACACAGCAGTTGCTGGAGGCCGCCTTCCTGGCCCCAACAA
CTGCCGAATAA

Protein sequence :
MNQDNLIEVRDLAVEFIVGERRQRVVEGVSFDIKRGETLALVGESGSGKSVTAHSILRLLPYPLAHHPTGTIQYAGQNLL
GLKEKTIRHIRGNRIAMIFQEPMTSLNPLHSIEKQINEVLGIHKGLSGKVATRRTLELLELVGIPEPHKRLKALPHELSG
GQRQRVMIAMALANEPELLIADEPTTALDVTVQLKILQLLKELQARLGMSLLLISHDLNLVRRIAHRVCVMQRGCIVEQA
SCEELFRAPQHPYTRELLGAEPSGTPASNVVGPPLLQVEDLKVWFPIKKGLFKRTVDYIKAVDGIRFSLPQGQTLGIVGE
SGSGKSTLGLAILRLIGSQGGIRFEGKQLDSLTQQQVRPLRREMQVVFQDPFGSLSPRMCVSQIVGEGLRIHKIGTEAEQ
EQAIIAALKEVGLDPETRNRYPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQRQVVELLRSLQTKYNLTYLF
ISHDLAVVKALSHQLMVVKHGQVVEQGDARSIFAAPQHPYTQQLLEAAFLAPTTAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
oppDF2 YP_005683914.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 5e-74 43
cpfrc_01561 YP_003783961.1 hypothetical protein Not tested PiCp 6 Protein 5e-74 43
oppDF2 YP_005686002.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 5e-74 43
oppDF2 YP_005681814.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 5e-74 43
dppD YP_005160017.1 putative peptide ABC transport system ATP-binding protein Not tested Not named Protein 1e-90 42