Gene Information

Name : PSEBR_a3279 (PSEBR_a3279)
Accession : YP_004354596.1
Strain : Pseudomonas brassicacearum NFM421
Genome accession: NC_015379
Putative virulence/resistance : Resistance
Product : Arsenical pump membrane protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1055
EC number : -
Position : 4056532 - 4057815 bp
Length : 1284 bp
Strand : -
Note : -

DNA sequence : 
ATGCTGATCGCGTCATTGATTTTCCTGCTGACCATTACGTTGGTGATCTGGCAGCCCAAGGGGCTTGGCGTCGGCTGGAG
CGCGACGCTCGGCGCGCTGCTGGCGTTGTTGAGCGGGGTGGTGCAGGTCGGCGACATTGCGCTGGTCTGGCAGATCATCT
GGAACGCCACCGGTACGTTTGTCGCGCTGATCATCATCAGCCTGCTGCTGGACGAGGCCGGCTTCTTCGCCTGGGCGGCC
TTGCACGTGGCCCGTTGGGGAAAGGGCAGCGGGCGCAAGCTGTTTGCGTTCATGGTGCTGCTGGGCGCGCTGGTGTCGGC
CCTGTTTGCCAATGATGGGGCGGCGTTGATCCTGACGCCCATCGTGATTTCGATGCTGCTGGCGTTGCGGTTTTCCCCGG
CGGCGACCCTGGCATTCGTGATGGGTGCCGGTTTCATTGCCGACAGCGCGAGCCTGCCGCTGGTGGTGTCGAACCTGGTG
AACATCGTCTCGGCGGACTTCTTCGGCATTGGCTTCAACCGCTACGCGGCGGTCATGGTGCCGGTGAACCTGGTCAGTGT
GGCGGCCAGCCTGGCGATCTTGCTGTGGTTCTTTCGTCGCGACATCCCGCGCGACTACGACCCCGCTCAACTGGATGATC
CGGCGACGGCGATCCACGACAAGGCAACGTTTTATGCCGGCTGGGTGGTGCTGGTGATCCTGCTGCTGGGCTGCTTTGCG
CTGGAGCCGCTGGGGATTCCCATCAGCGCGATTTCCGCGGTCTGTGCTGCGTTGCTGCTGGCTGTCGCGGCCCGCGGCCA
CAAGATTTCCACCCGCAAGGTGATGAAGGAAGCGCCCTGGCAGATCGTGATTTTCTCCCTCGGCATGTACCTGGTGGTCT
ATGGCCTGCGCAATGCCGGGTTGACCGGCTACCTGGCCCATTGGCTCGACGGCTTCGCCGAATATGGCGTGTGGGGTGCG
GCCATGGGCACCGGCGTGCTGACGGCGTTGCTCTCGTCGGCCATGAATAATTTGCCGACGGTGCTGGTCGGCGCCTTGTC
CATCGATGCCAGCCAGGCCACCGGGGTGGTGAAGGAGGCGATGATCTACGCCAACGTCATCGGCAGCGACCTGGGCCCGA
AAATCACCCCGATCGGCAGCCTGGCGACTTTGCTGTGGCTGCATGTGCTGGAGCGCAAGAACATCCAGATCGGCTGGGGG
TACTACTTCAAGGTCGGGATCGTACTGACAGTGCCGGTGTTGCTGGTGACATTGGCAGCGCTGGCGGTGCGATTGTCACT
CTAG

Protein sequence : 
MLIASLIFLLTITLVIWQPKGLGVGWSATLGALLALLSGVVQVGDIALVWQIIWNATGTFVALIIISLLLDEAGFFAWAA
LHVARWGKGSGRKLFAFMVLLGALVSALFANDGAALILTPIVISMLLALRFSPAATLAFVMGAGFIADSASLPLVVSNLV
NIVSADFFGIGFNRYAAVMVPVNLVSVAASLAILLWFFRRDIPRDYDPAQLDDPATAIHDKATFYAGWVVLVILLLGCFA
LEPLGIPISAISAVCAALLLAVAARGHKISTRKVMKEAPWQIVIFSLGMYLVVYGLRNAGLTGYLAHWLDGFAEYGVWGA
AMGTGVLTALLSSAMNNLPTVLVGALSIDASQATGVVKEAMIYANVIGSDLGPKITPIGSLATLLWLHVLERKNIQIGWG
YYFKVGIVLTVPVLLVTLAALAVRLSL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
arsB2 YP_001007633.1 arsenical pump membrane protein Not tested YAPI Protein 7e-121 72
arsB YP_252017.1 arsenical pump membrane protein Not tested SCCmec Protein 2e-90 54
SH0109 YP_252024.1 arsenical pump membrane protein Not tested SCCmec Protein 2e-93 54
arsB YP_005754065.1 arsenical pump membrane protein Not tested Type-XI SCCmec Protein 4e-89 53

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSEBR_a3279 YP_004354596.1 Arsenical pump membrane protein BAC0576 Protein 8e-121 73
PSEBR_a3279 YP_004354596.1 Arsenical pump membrane protein BAC0578 Protein 3e-121 73
PSEBR_a3279 YP_004354596.1 Arsenical pump membrane protein BAC0031 Protein 3e-117 72
PSEBR_a3279 YP_004354596.1 Arsenical pump membrane protein BAC0577 Protein 7e-116 71
PSEBR_a3279 YP_004354596.1 Arsenical pump membrane protein BAC0575 Protein 3e-92 54
PSEBR_a3279 YP_004354596.1 Arsenical pump membrane protein BAC0574 Protein 4e-93 54