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Name : PSEBR_a3227 (PSEBR_a3227) Accession : YP_004354541.1 Strain : Pseudomonas brassicacearum NFM421 Genome accession: NC_015379 Putative virulence/resistance : Virulence Product : type II secretion pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 3987347 - 3988765 bp Length : 1419 bp Strand : - Note : - DNA sequence : ATGAACACCCTCCCATACGCCTGGGCCAAGGCCCAGCGCCTGGTGTTGCGCCAGTCCGAAGAAGGTGCGGTGCTGATGGT GTGTCCGTCCACGCCGGGCTGGTCCATCAGTGAAGTGCGTCGTCAGTTTGGTGAGGTGCGGTTGGAGCGGGTGCGCGACG AGGAGCTCGATGGGCTGCTCAACAGTGCCTATGCCGACACCGGCAGCGCCGCGGCGGTGGTGGGCGCGGCGGAAAACGAA GTCGACCTCGACCGGCTGATGCAGGACATCCCCGAGATCACTGACCTGCTGGACACCCAGGACGGCGCGCCGGTGATCCG CATGATCAACGCCTTGCTGACCCAGGCCGCACGGGACGAGGCCAGCGACATCCACATCGAACCCTACGAGAGCCATTCGG TGGTGCGCTACCGCGTCGACGGCACCCTGCGCGATGTGGTTTCGCCGCGCAAGGCCCTGCACGGCGCACTGGTGTCGCGG ATCAAGATCATGGCCCAGCTCGACATCGCCGAAAAACGCCTGCCCCAGGACGGGCGCATCGCCCTGCGCGTCGCCGGGCG ACCGATCGATATCCGCGTCTCGACGGTGCCCACCGGCCACGGCGAACGGGTGGTGATGCGGTTGCTGGACAAGCAGGCCG GACGCCTGCAATTGGAAACGTTGGGGATGGACACGGACGTGCTGGGCAAGCTCGATCACCTGATCCGCCAGCCCCACGGC ATCGTCCTGGTTACCGGCCCCACGGGCAGCGGCAAGACCACCAGCCTCTACGCCGCCCTGGCTCGGCTGGACGCCAGCGT GCACAACATCCTCACGGTGGAAGACCCGGTGGAATACGACCTGCCGGGCATCAGCCAGATCCAGGTCAACGCCAAGATCG ACATGACTTTCGCCCTGGCCCTGCGTGCGATCCTGCGCCAGGACCCGGACATCATCATGATCGGCGAAATTCGCGACCTG GAGACCGCGCAAATCGCCGTGCAGGCCTCCCTCACCGGGCACCTGGTGCTGGCGACGCTGCACACCAATGATGCGGTGTC GGCCGTCAACCGCTTGATCGACATGGGCGTCGAGCCGTTCCTGCTGGCCTCATCGATGCTCGGCGTGCTCGCCCAGCGAC TGGTGCGCAGGTTGTGCCCGCAGTGCAAACAGCCCGATCCGGCCACGCCCGGCACCTGGCGTCCGGTGGGGTGCCCGACC TGTAACCAGACCGGCTACAGCGGCCGCACCGGCATCCATGAATTATTCTGCATCGACGATGACATCCGCACGCTGATCCA CCAGGGGGCAGGGGAGCAGGCACTGCGCGCCGCCGCTCGCCGAGCGGGGATGTTCAGCATGCGCGAGGACGGCGAGCGCT GGGTGCGCAGTGGCACCACGGCCCCTGAAGAAATCCTGCGCGTAACACGGGACGCCTGA Protein sequence : MNTLPYAWAKAQRLVLRQSEEGAVLMVCPSTPGWSISEVRRQFGEVRLERVRDEELDGLLNSAYADTGSAAAVVGAAENE VDLDRLMQDIPEITDLLDTQDGAPVIRMINALLTQAARDEASDIHIEPYESHSVVRYRVDGTLRDVVSPRKALHGALVSR IKIMAQLDIAEKRLPQDGRIALRVAGRPIDIRVSTVPTGHGERVVMRLLDKQAGRLQLETLGMDTDVLGKLDHLIRQPHG IVLVTGPTGSGKTTSLYAALARLDASVHNILTVEDPVEYDLPGISQIQVNAKIDMTFALALRAILRQDPDIIMIGEIRDL ETAQIAVQASLTGHLVLATLHTNDAVSAVNRLIDMGVEPFLLASSMLGVLAQRLVRRLCPQCKQPDPATPGTWRPVGCPT CNQTGYSGRTGIHELFCIDDDIRTLIHQGAGEQALRAAARRAGMFSMREDGERWVRSGTTAPEEILRVTRDA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-109 | 57 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-109 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PSEBR_a3227 | YP_004354541.1 | type II secretion pathway protein E | VFG0182 | Protein | 3e-120 | 62 |
| PSEBR_a3227 | YP_004354541.1 | type II secretion pathway protein E | VFG2048 | Protein | 1e-108 | 56 |
| PSEBR_a3227 | YP_004354541.1 | type II secretion pathway protein E | VFG1876 | Protein | 2e-114 | 51 |
| PSEBR_a3227 | YP_004354541.1 | type II secretion pathway protein E | VFG2426 | Protein | 7e-79 | 49 |
