Gene Information

Name : PSEBR_a2893 (PSEBR_a2893)
Accession : YP_004354198.1
Strain : Pseudomonas brassicacearum NFM421
Genome accession: NC_015379
Putative virulence/resistance : Virulence
Product : two-component system, response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3573433 - 3574137 bp
Length : 705 bp
Strand : +
Note : -

DNA sequence : 
ATGCGTTTGCTCATTGTCGAGGATGAAGAAAAAACCTCCTCCTACGTCCATCGTGGCTTGACCGAGCTCGGCTACATTGT
CGACGTTGCCACGAATGGCATCGATGGCCTGCATTACGCGCTGGAATGGGATTACGACGTGGTGATCCTGGATGTTATGT
TGCCGGGCAAAGACGGCTACGACGTGCTGCAAGGCCTGCGCCTGCAAAAGAAAACCCCGGTCATCATGTTGTCGGCCAGG
GGGACGGTGGATGACCGCATTCGAGGACTGCGCGAGGGGGCCGATGATTACCTGGGCAAGCCTTTTTCGTTTGCCGAACT
TGTCGCACGTGTCCAGGCCTTGATCCGTCGTCGCGCCGGTGACACGGTTGACCTGACACATTTGCGCATCGACGACCTGG
AAGTCGATCTGCAAGCGCGCAAGGTGACCCGGGGAGGGCTGCGGCTGGACCTGACGGCCAAGGAGTTCTCCCTGTTGAGC
CTGTTGGCGCGGCATCAGGGCGAGATCCTTTCCAAGTTGATGATTGCCGAGCAGGTCTGGGACATGAATTTCGACAGTGA
CGCCAACGTGGTCGAGGTCGCGATCAAGCGTGTTCGCGCCAAGGTAGATGCCCCGTATCCGCGCAAGCTGCTGCATACCG
TCCGCGGCATGGGGTATGTGCTGGAAAGCCGTGAGGTCGATAGCAGGCAAAGTGGAACGCCTTGA

Protein sequence : 
MRLLIVEDEEKTSSYVHRGLTELGYIVDVATNGIDGLHYALEWDYDVVILDVMLPGKDGYDVLQGLRLQKKTPVIMLSAR
GTVDDRIRGLREGADDYLGKPFSFAELVARVQALIRRRAGDTVDLTHLRIDDLEVDLQARKVTRGGLRLDLTAKEFSLLS
LLARHQGEILSKLMIAEQVWDMNFDSDANVVEVAIKRVRAKVDAPYPRKLLHTVRGMGYVLESREVDSRQSGTP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-54 53
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-53 52

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSEBR_a2893 YP_004354198.1 two-component system, response regulator BAC0197 Protein 2e-58 58
PSEBR_a2893 YP_004354198.1 two-component system, response regulator BAC0083 Protein 4e-57 57
PSEBR_a2893 YP_004354198.1 two-component system, response regulator BAC0125 Protein 2e-59 56
PSEBR_a2893 YP_004354198.1 two-component system, response regulator BAC0638 Protein 4e-52 56
PSEBR_a2893 YP_004354198.1 two-component system, response regulator BAC0111 Protein 2e-59 54
PSEBR_a2893 YP_004354198.1 two-component system, response regulator BAC0347 Protein 5e-52 51
PSEBR_a2893 YP_004354198.1 two-component system, response regulator BAC0308 Protein 2e-49 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSEBR_a2893 YP_004354198.1 two-component system, response regulator VFG0596 Protein 2e-54 53
PSEBR_a2893 YP_004354198.1 two-component system, response regulator VFG1389 Protein 9e-38 45