Gene Information

Name : PSEBR_a2505 (PSEBR_a2505)
Accession : YP_004353788.1
Strain : Pseudomonas brassicacearum NFM421
Genome accession: NC_015379
Putative virulence/resistance : Virulence
Product : two component regulator system response regulator PmrA
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3120597 - 3121259 bp
Length : 663 bp
Strand : +
Note : -

DNA sequence : 
GTGCGTTTATTACTGATCGAGGATGACGTGGCCTTGGGGGAGGGCATCCATCAGGCCCTGAGTCGCGAAGGTTATACCGT
CGACTGGGTGCAGGACGGCAGCAGCGCCTTGCATTCGTTGCTCAGTGAAACCTTCGACCTGGCGGTGCTCGACCTGGGCC
TGCCACGCATGGACGGCCTGCAAGTGTTGCGGCGCTTGCGTGACAGTGGTTCCAACCTGCCGGTGCTGATCCTCACCGCC
CGCGATGCCACCGAGGATCGCATCGCCGGGTTGGACGCCGGGGCCGATGATTATCTGGTCAAGCCCTTCGATCTGGCGGA
ACTCAAGGCCCGGCTACGGGCCTTGTTGCGCCGCAGCGCCGGCCGCGCCCAGGCGTTGATCGAACATGCCGGTATCAGCC
TGAACCCCGGTACCCAGCAAGTCAGTTACCAGGGCAAGCCGGTGGCGCTGACACCCAAGGAATATCAGCTGCTCCATGAG
CTGCTCTCGCCGCCGGGCCGAGTCATGACCCGCGATCATCTGATGCAGCTGCTCTACGGCTGGAGCGAGGAGGCCGAGAG
CAACACGCTGGAAGTGCACATCCATCACCTGCGCAAGAAATTCTCCACCGACCTGATCCGCACCATCCGCGGTGTCGGTT
ACCTGGTGGAGGAGCGTCGATGA

Protein sequence : 
MRLLLIEDDVALGEGIHQALSREGYTVDWVQDGSSALHSLLSETFDLAVLDLGLPRMDGLQVLRRLRDSGSNLPVLILTA
RDATEDRIAGLDAGADDYLVKPFDLAELKARLRALLRRSAGRAQALIEHAGISLNPGTQQVSYQGKPVALTPKEYQLLHE
LLSPPGRVMTRDHLMQLLYGWSEEAESNTLEVHIHHLRKKFSTDLIRTIRGVGYLVEERR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 2e-33 48
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-29 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSEBR_a2505 YP_004353788.1 two component regulator system response regulator PmrA BAC0487 Protein 1e-35 49
PSEBR_a2505 YP_004353788.1 two component regulator system response regulator PmrA NC_002516.2.879194.p Protein 4e-29 44
PSEBR_a2505 YP_004353788.1 two component regulator system response regulator PmrA AE015929.1.gene1106. Protein 7e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSEBR_a2505 YP_004353788.1 two component regulator system response regulator PmrA VFG0473 Protein 6e-37 50
PSEBR_a2505 YP_004353788.1 two component regulator system response regulator PmrA VFG0596 Protein 2e-29 42