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Name : PSEBR_a233 (PSEBR_a233) Accession : YP_004351370.1 Strain : Pseudomonas brassicacearum NFM421 Genome accession: NC_015379 Putative virulence/resistance : Virulence Product : sigma-54 dependent regulatory protein Function : - COG functional category : T : Signal transduction mechanisms COG ID : COG2204 EC number : - Position : 297170 - 298093 bp Length : 924 bp Strand : + Note : - DNA sequence : ATGAGTTTGCATGAAACCTTCGGTCAGCCCTTGCTGACCTTTCCCGATGCGGAAAAAAGCCCCCTGAGCATTCGCGCCAA GGCGCTGGTGTTCGTCGACCCCCGTTCACGGCAGTTGCGCCAGGAATTGGAGCAACTGGCACCCCGTGCGATTTCGGTGC TGATACGCGGCGAAACCGGTAGCGGCAAGGAACTGCTGGCCCGGCATATCCATCGCGAAAGCGATCGCGGCGGATTGTTT GTGTCGGTCAACTGCGGCGCTATCAGCCCGACCTACGCCGACGCCGAACTGTTCGGTTATGCCGCCGGCAGCTACAGTGG CTCGGCCAGCAGCCGGGCCGGTTGGTTCGGCTCGGCCAACGGCGGCACCCTTTACCTGGACGAAATCGGCGATTTGCCAC TGCCGATCCAGATCAAGTTGCTGGCGGCCCTGGAGAACCACGAAGTCACCCGTGTCGGCGCGCATCAGCCCAGTCCGGTG GATGTCCGCCTGGTTGCGGCCACCAGCATCGACCTGGCGCAAGCAGTGGCCGCCGGGAAATTCCATGAGCGGCTCTATCA CTACCTGAGTGAAGGCCGGCTCGAATTGCCCGCCCTGCGTGAGAGAGTGGGCGATATCCTGTCATTGGCCGAGTATTTCC TGGGCATCTACAGCCAACGCCTGGGCCTGACAGTGCCGCTGATCAGCGAAGCGGCGCAACTCGCACTTGAACAGCACAGT TGGCCGGGCAATACCCGCGAACTGGAGAATGTCATTCATTTTGCGTTGTTGGTGAGCACTGGGGATTACATCTTGCCAGA ACATCTTAACTTGCCAGCCCTGACGGAACCTTTGGCGGTGGTAAAGCAGATGGCTCTAACGTTAGTCAGGTCCGGCAATC ATCAGCAACTGGAGCAGTTGAAAGAGTGGTTTGCTGAACTCTGA Protein sequence : MSLHETFGQPLLTFPDAEKSPLSIRAKALVFVDPRSRQLRQELEQLAPRAISVLIRGETGSGKELLARHIHRESDRGGLF VSVNCGAISPTYADAELFGYAAGSYSGSASSRAGWFGSANGGTLYLDEIGDLPLPIQIKLLAALENHEVTRVGAHQPSPV DVRLVAATSIDLAQAVAAGKFHERLYHYLSEGRLELPALRERVGDILSLAEYFLGIYSQRLGLTVPLISEAAQLALEQHS WPGNTRELENVIHFALLVSTGDYILPEHLNLPALTEPLAVVKQMALTLVRSGNHQQLEQLKEWFAEL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpS | AAT96161.1 | HrpS | Virulence | T-PAI | Protein | 6e-29 | 43 |
| hrpS | AAT96215.1 | HrpS | Virulence | T-PAI | Protein | 6e-29 | 43 |
| hrpS | AAA17650.1 | positive regulatory factor | Not tested | Hrp PAI | Protein | 1e-32 | 41 |
| hrpS | ABQ88367.1 | HrpS | Virulence | Hrp PAI | Protein | 1e-32 | 41 |
| hrpS | NP_791207.1 | type III transcriptional regulator HrpS | Virulence | Hrp PAI | Protein | 1e-29 | 41 |
| hrpS | AAC34753.1 | HrpS | Virulence | Hrp PAI | Protein | 1e-29 | 41 |
