Gene Information

Name : PSEBR_a2310 (PSEBR_a2310)
Accession : YP_004353593.1
Strain : Pseudomonas brassicacearum NFM421
Genome accession: NC_015379
Putative virulence/resistance : Virulence
Product : aldehyde dehydrogenase (NAD(+))
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG1012
EC number : -
Position : 2855988 - 2857481 bp
Length : 1494 bp
Strand : +
Note : -

DNA sequence :
ATGAGTCACTTGACCCGAGCAGAGTGGGAAGCCAGAGCCAAGGCGCTGGACATCGAGGGCCGTGCCTTTATCGACGGGCG
ATACAGGCCTGCCAGTTCAGGCGCTACCTTTGAATGCGTGAGTCCTGTGGACGGGCGATTGTTGGGCCTGGTTGCAAGTT
GCGATGCCGCGGACGCCGAGCTGGCCGTGACCAGCGCCCGGGCGGCATTCGACTCCGGCGTTTGGTCGCGTCAGGCACCG
GCAGTGCGCAAGGCGGTCATGCTGCGTTTTTCCGACCTCTTGCAGTCTCACGCCGAAGAGCTGGCACTGCTGGAAACGCT
GGACATGGGCAAACCGATCGCCGACTCGCTGGCGGTCGACCTGCCCGGCGCCATCGATAGCATTCGCTGGTGCGGGGAGG
CCATCGACAAGATCTACGATGAGGTGGCCGCGACGGCGGTAGATCAGCTCGGGCTGGTGACGCGGGAGCCGGTCGGGGTG
GTCGCTGCCATCGTGCCGTGGAATTTCCCGTTGATGATGGCTTCGTGGAAATTGGGGCCGGCATTGGCGACCGGCAACTC
GGTGATTCTCAAGCCTTCAGAGCGTTCGCCGCTGACGGCTATTCGTATCGCACAGCTTGCCCTGGAAGCAGGGTTGCCGG
TCGGTGTGCTCAATGTGCTGCCAGGCCATGGACACACGGTGGGCAAGGCCCTGGCCTTGCACGGTGACGTTGATGCGCTG
GCGTTTACCGGTTCCACCCGAGTGGCCAAGCAACTTCTCGTGTATGCGGGCGAGTCGAACATGAAGCGGGTTTGGCTGGA
GGCGGGGGGGAAGAGTCCGAACATTGTCTTCGCAGATGCCCCAGATCTACAGGCAGCCGCCGAAGCGGCAGCGGCCGCCA
TTGCTTTCAACCAGGGCGAGGTGTGCACCGCCGGTTCACGTTTGCTCGTCCAGGCTTCCATCAAGGCGCACTTCGTGCCG
ATGGTGGTCGAGGCTTTAAAAGGCTGGAAGCCAGGCCATCCGCTGGATCCCGACACCAATGTCGGTGCGCTGGTGGACGC
GCGCCACCTGGAAGGGGTGTTGCAACACATTCGGCAAGGACAGGATCAAGGCGCCCAGTTGTTGCTGGGAGGGCGCGTGG
CATTGGAGCAAACCGGCGGCAGCTACGTGGAGCCGACACTGTTCGACAATGTCAGCAACTCGATGACAATTGCCCGGGAA
GAGATTTTCGGCCCGGTGCTGTCGGTGATCGAATTCGACGAAGCCGAGGATGCGGTGCGCATCGCCAACGACACGCCTTA
CGGGCTGGCTGCAGCCGTCTGGACGGCCAACCTGTCGCGCGCCCACACCATGGCCCGCGCACTTCGCGCCGGAAGTGTCT
GGGTCAACCTGTATGACGGCGGTGACATGATGGCGCCGTTCGGTGGCTACAAGCAGTCCGGTAATGGCCGCGACAAATCC
CTGCATGCCTTCGATAAATACACCGAGATCAAGGCCACCTGGATACAGCTCTGA

Protein sequence :
MSHLTRAEWEARAKALDIEGRAFIDGRYRPASSGATFECVSPVDGRLLGLVASCDAADAELAVTSARAAFDSGVWSRQAP
AVRKAVMLRFSDLLQSHAEELALLETLDMGKPIADSLAVDLPGAIDSIRWCGEAIDKIYDEVAATAVDQLGLVTREPVGV
VAAIVPWNFPLMMASWKLGPALATGNSVILKPSERSPLTAIRIAQLALEAGLPVGVLNVLPGHGHTVGKALALHGDVDAL
AFTGSTRVAKQLLVYAGESNMKRVWLEAGGKSPNIVFADAPDLQAAAEAAAAAIAFNQGEVCTAGSRLLVQASIKAHFVP
MVVEALKGWKPGHPLDPDTNVGALVDARHLEGVLQHIRQGQDQGAQLLLGGRVALEQTGGSYVEPTLFDNVSNSMTIARE
EIFGPVLSVIEFDEAEDAVRIANDTPYGLAAAVWTANLSRAHTMARALRAGSVWVNLYDGGDMMAPFGGYKQSGNGRDKS
LHAFDKYTEIKATWIQL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ORF SG19 AAN62241.1 putative aldehyde dehydrogenase Not tested PAGI-3(SG) Protein 1e-119 57
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 3e-71 41
aldA AAK20747.1 aldehyde dehydrogenase Virulence VPI Protein 4e-72 41
aldA AAK20776.1 aldehyde dehydrogenase Virulence VPI Protein 4e-72 41
aldA AAC12273.1 aldehyde dehydrogenase Virulence VPI Protein 4e-72 41
aldA-1 YP_001216300.1 aldehyde dehydrogenase Not tested VPI-1 Protein 1e-71 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSEBR_a2310 YP_004353593.1 aldehyde dehydrogenase (NAD(+)) VFG0082 Protein 1e-71 41