Gene Information

Name : PSEBR_a1995 (PSEBR_a1995)
Accession : YP_004353227.1
Strain : Pseudomonas brassicacearum NFM421
Genome accession: NC_015379
Putative virulence/resistance : Virulence
Product : DNA repair protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2003
EC number : -
Position : 2436972 - 2437463 bp
Length : 492 bp
Strand : -
Note : -

DNA sequence : 
ATGACAACAATTTTCCCAATGGCTACATCGGCTAACGAGGACAGCCCCAGATATCATGAAGATCAGTTGATCAAGCAAGC
CATCGCGATTCTTGAGAACCGCATGTTCAAACGTGGGCCGTACCTCGAGAGCCCCGAAGATGTTCGTCAATATCTACGAC
TTCGGCTCGCTGGCGAAATCCAAGAGGTTTTTTCGGCTCTGTTTCTAGACGCTCGGCACCGGGTCGTGGCCTACGAGCCG
CTGTTCTACGGCACCATAGATGTGGTGAACGTATATCCCAGACGGATCCTGCAGCGTGCACTGGAGCATCAATGTGCAGC
GATTATCGTCGCGCATAACCATCCTTCAGGTGACACAATTCCAAGTCCAGGCGACATACAAATCACCAAAACGCTGAGCG
ACGTGCTGCCCAAGCTAAATGTCCGGCTTTTGGACCATTTCATCATTGGTGAAGGTGAGCCTTACTCTTTTGCAGAGTCT
GGTTTGATCTGA

Protein sequence : 
MTTIFPMATSANEDSPRYHEDQLIKQAIAILENRMFKRGPYLESPEDVRQYLRLRLAGEIQEVFSALFLDARHRVVAYEP
LFYGTIDVVNVYPRRILQRALEHQCAAIIVAHNHPSGDTIPSPGDIQITKTLSDVLPKLNVRLLDHFIIGEGEPYSFAES
GLI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 4e-36 54
radC AAN62275.1 putative DNA repair protein RadC Not tested PAGI-3(SG) Protein 2e-32 52
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 3e-25 45
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 3e-25 45
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-25 45
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 2e-26 42
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 4e-22 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSEBR_a1995 YP_004353227.1 DNA repair protein VFG1119 Protein 9e-26 45