Gene Information

Name : PSEBR_a1917 (PSEBR_a1917)
Accession : YP_004353144.1
Strain : Pseudomonas brassicacearum NFM421
Genome accession: NC_015379
Putative virulence/resistance : Unknown
Product : DNA topoisomerase III
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0550
EC number : -
Position : 2336830 - 2338776 bp
Length : 1947 bp
Strand : -
Note : -

DNA sequence :
ATGCAGCTGTACCTGTGTGAAAAACCGTCCCAGGCCAAGGACATCGCCGCCGTGCTCGGTGCCACGCGCCGTGGCGACGG
TTGCTGGCTGGGCCCTGGCATCACGGTCACCTGGTGCATCGGCCATCTGCTGGAAACCGCCCCACCCGACGCCTACGACG
CGCGCTACAAGCGCTGGGTACTGGCCGACCTGCCCATCGTGCCGGCGCAATGGAAAATGACCGTCAAGCCGAAAACCGCC
AGCCAGTACAAGGCGGTCAAGCGCCTGCTGGGGGAAGCGAAGGAATTGGTGATCGCCACCGACGCCGACCGCGAAGGCGA
AATGATCGCCCGGGAGCTGGTGGAACATTGCCGTTATCGCGGGCCGATCCGGCGGCTATGGCTGTCGGCCCTGGACGAAG
CATCGATCCGCAAGGCCCTGGCCGCCCTCAAGCCGGGGGCCGAAACCTTCAACCTGTATCACTCGGCGCTGGGCCGTTCC
CGGGCCGACTGGCTGATCGGCATGAACATGAGTCGCCTGTTCACCCTGCTGGGGCGCCAGTCCGGCTACCAGGGCGTGTT
GCCGGTGGGCCGCGTACAGACACCCACGCTGCGCCTGGTGGTGGACCGCGACCGCAGCATCGCCGACTTCGTACCGATCG
CCTATTGGGCCATCGACGTGCAGCTCAGCCACGAAGGCACGGCGTTCACCGCCCAGTGGCGCGCCGACCCGGACGCCTGC
GACGACCAGGAGCGCTGCCTGAACCAGGCCCTGGCCCGAGACGCGGCCATGGCCATGAGCAACGCCGCCAGCGCCCGGAC
GCTGAAAGTGCGCACCGAGCGTCTGCGCGAAGCGGCACCCTTGCCCTTCGACCTGGGCACGCTGCAGGAAGTCTGCTCGA
AGAAACTCGGCCTCGGCGCCCAGGAAACCCTGGACATCGCCCAGTCGCTCTACGAGACCTACAAGCTCATCACCTACCCT
CGCAGCGATTGCGGTTTCCTGCCCTTGAGCCAGCACAGTGAAGCACCAGCCATCCTGGCCGCCCTCGCCCAGGCCGACCC
AAGCCTTGCACCGCTGCGCGAGCACCTGCAGCCGCAACGCAAGTCCCGGGCCTGGAACGACGCCAAGGTCAGCGCCCACC
ACGGCATCATTCCCACCGCCGCCGCCAGGAACCTCGACAAACTCGCCGGCAAGCAGCGCGCGGTCTATACGCTGATTCGC
GCGCGCTACCTGGCGCAGTTCCTGCCCAACCACGAATACGACCGGACCCAGGCCGACTTCGACTGTGCCGGCCAGGCGCT
GCGGGCCGTAGGCAAGCAGATCGTCGAACCCGGCTGGAAACGCGCCCTGCCCGAAGCGCTGGCCCCGGCCAGGGGCCGTG
AAGCACCGGCGCCGCAGACCTTGCCGGCGCTGGCCGAAGGCCGCGACTGCGCCGTGGACGAGGTGAAACCCAAGGACCTG
TGGACCCAACCGCCCAAGCCGTTCACCGAAGGCGACCTGATCAAGGCGATGAAGAACGTCGCCAAACTGGTAGAAGATCC
GCTGCTCAAGCAAAAGCTCAAGGACACCACCGGCATTGGCACCGAAGCGACCCGGGCCTCGATCATCCAGGGGCTGCTCG
ACCGCGGTTACCTGGTGAAAAACGGCAAGGCGCTGTCCGCCACCCCGGCGGCCTTCAGCCTGATCGACGCCGTGCCCCGG
GCCATCGCCGACCCGGGCACCACGGCCATCTGGGAGCAGGCGCTGGACATGGTGCAAAGCGGCGAAATGAGCCTGGAGGA
ATTCGTGACCCGACAAGCCGCCTGGATGAGCAAGCACGTCGCCCGCTGCCAGGGCATGAGCCTGACCATCAGCGGCCCGG
CCAGCCCCGCCGGGCGCGGCGCAACGCCGTGGAAAAACAAACGCAAGCCGGCCAAGCGCAAGGCTGGCGGCGCACCGCGC
AAGGCGAGCAAGGCCAAGGCGACCTGA

Protein sequence :
MQLYLCEKPSQAKDIAAVLGATRRGDGCWLGPGITVTWCIGHLLETAPPDAYDARYKRWVLADLPIVPAQWKMTVKPKTA
SQYKAVKRLLGEAKELVIATDADREGEMIARELVEHCRYRGPIRRLWLSALDEASIRKALAALKPGAETFNLYHSALGRS
RADWLIGMNMSRLFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPIAYWAIDVQLSHEGTAFTAQWRADPDAC
DDQERCLNQALARDAAMAMSNAASARTLKVRTERLREAAPLPFDLGTLQEVCSKKLGLGAQETLDIAQSLYETYKLITYP
RSDCGFLPLSQHSEAPAILAALAQADPSLAPLREHLQPQRKSRAWNDAKVSAHHGIIPTAAARNLDKLAGKQRAVYTLIR
ARYLAQFLPNHEYDRTQADFDCAGQALRAVGKQIVEPGWKRALPEALAPARGREAPAPQTLPALAEGRDCAVDEVKPKDL
WTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGIGTEATRASIIQGLLDRGYLVKNGKALSATPAAFSLIDAVPR
AIADPGTTAIWEQALDMVQSGEMSLEEFVTRQAAWMSKHVARCQGMSLTISGPASPAGRGATPWKNKRKPAKRKAGGAPR
KASKAKAT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
topB AAN62317.1 putative DNA topoisomerase III Not tested PAGI-3(SG) Protein 0.0 63
topB AAN62194.1 putative DNA topoisomerase III Not tested PAGI-2(C) Protein 0.0 62
pph56 CAI36097.1 Topoisomerase IA Not tested PPHGI-1 Protein 0.0 62
topB NP_458624.1 topoisomerase B Not tested SPI-7 Protein 4e-149 49
topB NP_807836.1 DNA topoisomerase III Not tested SPI-7 Protein 4e-149 49
topB AAF14809.1 topoisomerase B Not tested SPI-7 Protein 3e-149 49
PMI2630 YP_002152332.1 DNA topoisomerase III Not tested Not named Protein 2e-143 49
topB1 YP_005176228.1 DNA topoisomerase III Not tested ICEPmu1 Protein 2e-139 49
topB AAW83109.1 TopB Not tested GGI Protein 4e-110 41