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Name : PSEBR_a1917 (PSEBR_a1917) Accession : YP_004353144.1 Strain : Pseudomonas brassicacearum NFM421 Genome accession: NC_015379 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : - Position : 2336830 - 2338776 bp Length : 1947 bp Strand : - Note : - DNA sequence : ATGCAGCTGTACCTGTGTGAAAAACCGTCCCAGGCCAAGGACATCGCCGCCGTGCTCGGTGCCACGCGCCGTGGCGACGG TTGCTGGCTGGGCCCTGGCATCACGGTCACCTGGTGCATCGGCCATCTGCTGGAAACCGCCCCACCCGACGCCTACGACG CGCGCTACAAGCGCTGGGTACTGGCCGACCTGCCCATCGTGCCGGCGCAATGGAAAATGACCGTCAAGCCGAAAACCGCC AGCCAGTACAAGGCGGTCAAGCGCCTGCTGGGGGAAGCGAAGGAATTGGTGATCGCCACCGACGCCGACCGCGAAGGCGA AATGATCGCCCGGGAGCTGGTGGAACATTGCCGTTATCGCGGGCCGATCCGGCGGCTATGGCTGTCGGCCCTGGACGAAG CATCGATCCGCAAGGCCCTGGCCGCCCTCAAGCCGGGGGCCGAAACCTTCAACCTGTATCACTCGGCGCTGGGCCGTTCC CGGGCCGACTGGCTGATCGGCATGAACATGAGTCGCCTGTTCACCCTGCTGGGGCGCCAGTCCGGCTACCAGGGCGTGTT GCCGGTGGGCCGCGTACAGACACCCACGCTGCGCCTGGTGGTGGACCGCGACCGCAGCATCGCCGACTTCGTACCGATCG CCTATTGGGCCATCGACGTGCAGCTCAGCCACGAAGGCACGGCGTTCACCGCCCAGTGGCGCGCCGACCCGGACGCCTGC GACGACCAGGAGCGCTGCCTGAACCAGGCCCTGGCCCGAGACGCGGCCATGGCCATGAGCAACGCCGCCAGCGCCCGGAC GCTGAAAGTGCGCACCGAGCGTCTGCGCGAAGCGGCACCCTTGCCCTTCGACCTGGGCACGCTGCAGGAAGTCTGCTCGA AGAAACTCGGCCTCGGCGCCCAGGAAACCCTGGACATCGCCCAGTCGCTCTACGAGACCTACAAGCTCATCACCTACCCT CGCAGCGATTGCGGTTTCCTGCCCTTGAGCCAGCACAGTGAAGCACCAGCCATCCTGGCCGCCCTCGCCCAGGCCGACCC AAGCCTTGCACCGCTGCGCGAGCACCTGCAGCCGCAACGCAAGTCCCGGGCCTGGAACGACGCCAAGGTCAGCGCCCACC ACGGCATCATTCCCACCGCCGCCGCCAGGAACCTCGACAAACTCGCCGGCAAGCAGCGCGCGGTCTATACGCTGATTCGC GCGCGCTACCTGGCGCAGTTCCTGCCCAACCACGAATACGACCGGACCCAGGCCGACTTCGACTGTGCCGGCCAGGCGCT GCGGGCCGTAGGCAAGCAGATCGTCGAACCCGGCTGGAAACGCGCCCTGCCCGAAGCGCTGGCCCCGGCCAGGGGCCGTG AAGCACCGGCGCCGCAGACCTTGCCGGCGCTGGCCGAAGGCCGCGACTGCGCCGTGGACGAGGTGAAACCCAAGGACCTG TGGACCCAACCGCCCAAGCCGTTCACCGAAGGCGACCTGATCAAGGCGATGAAGAACGTCGCCAAACTGGTAGAAGATCC GCTGCTCAAGCAAAAGCTCAAGGACACCACCGGCATTGGCACCGAAGCGACCCGGGCCTCGATCATCCAGGGGCTGCTCG ACCGCGGTTACCTGGTGAAAAACGGCAAGGCGCTGTCCGCCACCCCGGCGGCCTTCAGCCTGATCGACGCCGTGCCCCGG GCCATCGCCGACCCGGGCACCACGGCCATCTGGGAGCAGGCGCTGGACATGGTGCAAAGCGGCGAAATGAGCCTGGAGGA ATTCGTGACCCGACAAGCCGCCTGGATGAGCAAGCACGTCGCCCGCTGCCAGGGCATGAGCCTGACCATCAGCGGCCCGG CCAGCCCCGCCGGGCGCGGCGCAACGCCGTGGAAAAACAAACGCAAGCCGGCCAAGCGCAAGGCTGGCGGCGCACCGCGC AAGGCGAGCAAGGCCAAGGCGACCTGA Protein sequence : MQLYLCEKPSQAKDIAAVLGATRRGDGCWLGPGITVTWCIGHLLETAPPDAYDARYKRWVLADLPIVPAQWKMTVKPKTA SQYKAVKRLLGEAKELVIATDADREGEMIARELVEHCRYRGPIRRLWLSALDEASIRKALAALKPGAETFNLYHSALGRS RADWLIGMNMSRLFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPIAYWAIDVQLSHEGTAFTAQWRADPDAC DDQERCLNQALARDAAMAMSNAASARTLKVRTERLREAAPLPFDLGTLQEVCSKKLGLGAQETLDIAQSLYETYKLITYP RSDCGFLPLSQHSEAPAILAALAQADPSLAPLREHLQPQRKSRAWNDAKVSAHHGIIPTAAARNLDKLAGKQRAVYTLIR ARYLAQFLPNHEYDRTQADFDCAGQALRAVGKQIVEPGWKRALPEALAPARGREAPAPQTLPALAEGRDCAVDEVKPKDL WTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGIGTEATRASIIQGLLDRGYLVKNGKALSATPAAFSLIDAVPR AIADPGTTAIWEQALDMVQSGEMSLEEFVTRQAAWMSKHVARCQGMSLTISGPASPAGRGATPWKNKRKPAKRKAGGAPR KASKAKAT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 0.0 | 63 |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 0.0 | 62 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 0.0 | 62 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 3e-149 | 49 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 4e-149 | 49 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 4e-149 | 49 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 2e-143 | 49 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 2e-139 | 49 |
| topB | AAW83109.1 | TopB | Not tested | GGI | Protein | 4e-110 | 41 |
