Gene Information

Name : PSEBR_a1672 (PSEBR_a1672)
Accession : YP_004352882.1
Strain : Pseudomonas brassicacearum NFM421
Genome accession: NC_015379
Putative virulence/resistance : Virulence
Product : OmpR family response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2038948 - 2039628 bp
Length : 681 bp
Strand : +
Note : -

DNA sequence : 
ATGCGCGTACTGGTCTGCGAAGACGATGAGTTGATTGCCAGCGGGATCGTTGCCGGCCTTACGGCGCAGGGCCTGACCGT
CGAGCACGTCGCCACTGCATCGGCGGCGCGGGCGATGGTCGGCGTGGCGGAATTCGATGTCATGGTGCTGGACTTGGGAT
TGCCCGACGAGGACGGTCTCAAACTGCTCAGGCAGTTGCGTCAGCAGGGGCTGGAGACGCCGGTGCTGATCCTCACCGCC
CGGGACTCGGTGACCGACCGGGTCGACGGCTTGCAGGCCGGCGCCGATGACTACCTGCTCAAACCCTTCGACCTGCGCGA
ACTTGCGGCGCGCCTGCACACGTTGCTGCGGCGCGTGGCGGGGCGCAGCGTCAACCTGATCGAACACGGTCGCCTGACCT
ATGACCCCAGCAGTCGGGAAACCACCCTGGACGGCCAACCGGTGGATCTGTCCCGGCGCGAGCAATCGCTGTTGCAGGCA
CTGTTGCACAGTCGCGGCAGGGTGCTGTCCACTGAACAGCTCAAGGACAGCGTCTACGGGTTCAACGACGAACTGGAAAG
CAACGCCCTCAACGTCCATATCCATCACCTGCGGCGCAAGTTGGGTAACGGGATTGTCGAGACCGTGCGTGGCCTGGGCT
ATCGCCTGGGGCCGGCCGAAGGTGGAGAGTCTTCCAAGTGA

Protein sequence : 
MRVLVCEDDELIASGIVAGLTAQGLTVEHVATASAARAMVGVAEFDVMVLDLGLPDEDGLKLLRQLRQQGLETPVLILTA
RDSVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVAGRSVNLIEHGRLTYDPSSRETTLDGQPVDLSRREQSLLQA
LLHSRGRVLSTEQLKDSVYGFNDELESNALNVHIHHLRRKLGNGIVETVRGLGYRLGPAEGGESSK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-50 55

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSEBR_a1672 YP_004352882.1 OmpR family response regulator BAC0487 Protein 5e-35 45
PSEBR_a1672 YP_004352882.1 OmpR family response regulator NC_002516.2.879194.p Protein 1e-27 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSEBR_a1672 YP_004352882.1 OmpR family response regulator VFG1389 Protein 1e-24 44
PSEBR_a1672 YP_004352882.1 OmpR family response regulator VFG0473 Protein 2e-36 43
PSEBR_a1672 YP_004352882.1 OmpR family response regulator VFG1390 Protein 1e-26 41