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Name : PSEBR_a1575 (PSEBR_a1575) Accession : YP_004352780.1 Strain : Pseudomonas brassicacearum NFM421 Genome accession: NC_015379 Putative virulence/resistance : Virulence Product : nucleotide sugar epimerase/dehydratase WbpM Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 1921339 - 1923333 bp Length : 1995 bp Strand : + Note : - DNA sequence : ATGGATAAGTTGAGAATAGCCCTGCTGGGATTGCCAAGACGCCACAAACGGGCGATACAAGTGGCAACAGACATCGTCCT TGTCTGGATCGCCCTCTGGTTGGCGTTCGTCGTTCGACTGGGTGTTGAAGCATTGGCCAGCCCGATTGCAACGCATTTGT GGCTTTTCGGGTCCGCACCGCTGGTCGCCATTCCTATCTTTATCCGCTTTGGCATGTATCGCGCGGTCATGCGTTATTTC GGTAACGACGCGCTGATCACGATTTGCAAGGCAGTCAGCCTTTCGGCCTTGCTGCTGGCCTTGGTGGTGTATTGGTACAG CAACCATAAAACCGTGGTACCACGCTCCATCATTTTCAATTATTGGTGGTTGAGCCTGATCATGATTGGTGGCTTGCGCC TGATGATGCGGCAATACTTCCTGGGGGACTGGTTTACTGCAGCCCAGCATGTACCCTTTACCAACCGGGACGACGGCCTG CCCAAGGTTGCTATTTATGGTGCCGGGGCCGCAGGCAACCAGCTCGTGGCCGCACTACGCATGGGGCGGGTGATGCGACC GGTCGCATTCATCGATGATGACAACAGCATTGCTGACAGAGTGATTGCTGGGCTGCAGGTCTATGAGCCCAGGCATATCC AAAAGATGATCGACACAACCGGCGCACAGGAAATTCTGCTGGCAGTGCCTTCCTCCTCACGTGGGCGCCGTCGAGAGATC TTGACGCTGCTTGAAGGTTTTCCACTGCATGTACGCAGTGTCCCCGGGTTCATGGACCTGGCCAGCGGCCGCGTCAAGGT CGATGATATCCAAGAAGTGGATATCGCGGACCTTCTCGGGCGCGATCCGGTCCCCGCGCAACCTGATCTTCTGGAGCATT GCATCACTGACCAGTCGGTCCTGGTCACTGGGGCCGGTGGTTCGATCGGCTCTGAGCTTTGTCGGCAAATCCTGGCACTT AAACCGACTACGTTGCTGCTATATGAGCATAGCGAATTCAATCTCTATAGCATTCTGTCCGAACTTGAACCTCGAATCCT TCGCGAGTCGTTGTCAGTTCGGCTGCTGCCTATCCTGGGATCGGTACGAGACCAGGACAAGCTGCTGGACGTGATGAGGA CCTGGAATGTCGATACGGTCTATCACGCCGCTGCCTATAAGCACGTCCCGATGGTCGAGCACAACATCGCCGAAGGCGTC CTGAACAACGTGATAGGTACGTTGAATACGGCACAGGCTGCGTTGCAGGCGGGTGTATCGAACTTCGTCCTGATCTCCAC GGATAAAGCGGTGCGCCCGACCAATGTCATGGGCAGCACCAAGCGGCTCGCGGAGCTGACCTTGCAAGCCCTCAGCCGTG AACTGGCCCCCGTGTTATTCGGCGACAAGGATAACGTTTCGCGGGTGAACAAGACGCGCTTTACCATGGTCCGGTTCGGT AACGTATTGGGTTCGTCCGGTTCGGTTATTCCCCTGTTCCATAAACAGATCAAGTCCGGCGGGCCGTTGACTGTTACCCA TCCCAAGATCACCCGTTATTTCATGACCATACCCGAGGCCGCGCAGTTGGTGATCCAGGCGGGCTCCATGGGGTTGGGCG GGGATGTGTTTGTGCTGGACATGGGCGAGCCAGTGAGGATTGTCGAGCTGGCGGAAAAAATGATTCATCTCTCTGGCCTG AGTGTTCGTTCGGAAAAGAATCCCCATGGCGACATTTCAATCGAGTTCACAGGCTTGCGTCCGGGCGAGAAGCTTTACGA GGAGTTGCTGATCGGCGACAACGTAGTCGCCACCCAGCACCCAATGATCATGAGTGCCAATGAGGACCATCTGTCTTGGG ACACGCTCAAGATCAAGCTGGCTGAGTTGCTGGCCGCCATTGAACACGATGACTACACCAGGGTTCGTCAGCTGCTTCGG GATACTGTCAGTGGTTACGCTCCGGACGGAGAGATTGTCGACTGGATCTATCAGCAACGCCGACTCGAACCCTGA Protein sequence : MDKLRIALLGLPRRHKRAIQVATDIVLVWIALWLAFVVRLGVEALASPIATHLWLFGSAPLVAIPIFIRFGMYRAVMRYF GNDALITICKAVSLSALLLALVVYWYSNHKTVVPRSIIFNYWWLSLIMIGGLRLMMRQYFLGDWFTAAQHVPFTNRDDGL PKVAIYGAGAAGNQLVAALRMGRVMRPVAFIDDDNSIADRVIAGLQVYEPRHIQKMIDTTGAQEILLAVPSSSRGRRREI LTLLEGFPLHVRSVPGFMDLASGRVKVDDIQEVDIADLLGRDPVPAQPDLLEHCITDQSVLVTGAGGSIGSELCRQILAL KPTTLLLYEHSEFNLYSILSELEPRILRESLSVRLLPILGSVRDQDKLLDVMRTWNVDTVYHAAAYKHVPMVEHNIAEGV LNNVIGTLNTAQAALQAGVSNFVLISTDKAVRPTNVMGSTKRLAELTLQALSRELAPVLFGDKDNVSRVNKTRFTMVRFG NVLGSSGSVIPLFHKQIKSGGPLTVTHPKITRYFMTIPEAAQLVIQAGSMGLGGDVFVLDMGEPVRIVELAEKMIHLSGL SVRSEKNPHGDISIEFTGLRPGEKLYEELLIGDNVVATQHPMIMSANEDHLSWDTLKIKLAELLAAIEHDDYTRVRQLLR DTVSGYAPDGEIVDWIYQQRRLEP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 2e-77 | 44 |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 3e-79 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PSEBR_a1575 | YP_004352780.1 | nucleotide sugar epimerase/dehydratase WbpM | VFG0029 | Protein | 7e-117 | 47 |
| PSEBR_a1575 | YP_004352780.1 | nucleotide sugar epimerase/dehydratase WbpM | VFG1300 | Protein | 6e-77 | 43 |
