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Name : PSEBR_a1571 (PSEBR_a1571) Accession : YP_004352776.1 Strain : Pseudomonas brassicacearum NFM421 Genome accession: NC_015379 Putative virulence/resistance : Virulence Product : nucleotide sugar epimerase/dehydratase WbpM Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 1914462 - 1916267 bp Length : 1806 bp Strand : + Note : - DNA sequence : ATGGATAGACTTCGCGTTGCATTGCTGGGCCTGCCGCGTCGGCAGAAACGACTGCTTCAGGTCATGGCCGACGTAGTGCT GGTCTGGGGGGCCTTGTGGTTGGCGTTCGTGGTGCGCCTTGGCTTTGACGAGATGATCAATCCCTTTACCAACCATCCAT GGCTCCTTGTCAGCGCATCTTTGATCGCTATCCCATTGTTCGTTCATTTTGGTATGTATCGGGCCGTCATGCGCTACCTG GGTAACGATGCCTTGATCGCGATCATCAAGGCAGTCAGCTTGAGCGCGTTGGTATTGGCGCTCGTGGTGTACTGGGGCGC ATCTTACATGGCGCCTGTCCCGCGTTCGGTCATCTTCAATTACTGGTGGCTCAGCCTGGTGATGATCGGCGGCTTGAGGT TGTTTATGCGCCAGTACTTCATGGGCGATTGGTTCATTCCCTCCCGCCATGCGCCCTTCATCAACCGTAACGCCAGCCTT ACCAAAGTGGCGATCTACGGAGCCGGTGCTGCCGGTAATCAACTGGTAGCAGCCTTGCGCATTGGTCGAGATATGCAACC AGTGGCTTTCATCGATGACGATGCCAGTATCGCCAATCGAATGATTTCTGGTCTGCAGGTATTCAAGGCCAAGCATATCC AGAAGATGATTCGCCTCACTGGCGCTCAAGAAGTGCTGTTGGCCGTTCCTTCGGCGAGTCGTGCGCGACGCCGTGAAATC CTTGGGTATCTGGAAGGCTATCCACTGCACGTACGCAGTGTGCCGGGTTTCATGGATCTGGCCAGCGGCCGTGTGAAAGT CGACGATATCCAGGAAGTCGATATTGCCGACTTGTTGGGTCGAGATGCGGTGCCTGCACAACCCGAGCTTCTGTCGCGTT GTATTCGGGGAAAGGTTGTCCTGGTTACGGGAGCGGGTGGGTCGATTGGTTCTGAACTCTGTCGTCAGATTCTCGCCCTG CAGCCGTCCACTTTGCTGTTGTTCGATCACAGCGAGTTCAACCTCTACAGTATCTTGAGCGAACTGGAAGAGACCATCGT CCGACAATCAATCGCGGTAAATCTATTGCCGATCCTGGGCTCGGTACGTAACGCGACCAAACTGTTCGACGTCATGAAGT CCTGGAGCGTCGAGACGGTGTATCACGCAGCAGCCTATAAGCATGTGCCCCTCGTGGAGCACAATATCGCCGAAGGCATG CTCAACAACGTCATCGGTACGTTGAACACCGCGCAAGCGGCGTTGAAGGCTCAGGTCGAGAACTTTGTGCTCATTTCCAC GGACAAGGCCGTGCGTCCGACCAATGTCATGGGCAGCACCAAGCGCTTGGCAGAAATGGTCTTGCAAGCACTGAGTCATG AGCTGGCGCCAGTGCTCTTCGCAGACAGCGGTAATGTTGCCCGGGTCAATAAGACCCGTTTTGTCATGGTGCGCTTCGGT AATGTGCTGGGTTCATCCGGCTCGGTTATTCCGCGTTTCCGGCAGCAGATCAAATCCGGCGGCCCCATCACCGTCACGCA TCCCAATATCACCCGTTATTTCATGACAATCCCGGAAGCTGCCCAGTTGGTGATTCAGGCAGGTTCGATGGGGCGAGGCG GCGATGTGTTTGTGCTGGATATGGGAGAACCGGTGAAAATCGCCGAGTTGGCTGAGAAAATGGTCCACCTGTCTGGCTTG AATGTGTGCTCCGAGAAGAATGTGCACGGGGATATTGCAATTGAGTTCACGGGGTTGCGTCCAGGCGAGAAGCTCTACGA GGAACTGTTGATCGGTGACAACGTGGTCGCGACCCAGCACCCATGA Protein sequence : MDRLRVALLGLPRRQKRLLQVMADVVLVWGALWLAFVVRLGFDEMINPFTNHPWLLVSASLIAIPLFVHFGMYRAVMRYL GNDALIAIIKAVSLSALVLALVVYWGASYMAPVPRSVIFNYWWLSLVMIGGLRLFMRQYFMGDWFIPSRHAPFINRNASL TKVAIYGAGAAGNQLVAALRIGRDMQPVAFIDDDASIANRMISGLQVFKAKHIQKMIRLTGAQEVLLAVPSASRARRREI LGYLEGYPLHVRSVPGFMDLASGRVKVDDIQEVDIADLLGRDAVPAQPELLSRCIRGKVVLVTGAGGSIGSELCRQILAL QPSTLLLFDHSEFNLYSILSELEETIVRQSIAVNLLPILGSVRNATKLFDVMKSWSVETVYHAAAYKHVPLVEHNIAEGM LNNVIGTLNTAQAALKAQVENFVLISTDKAVRPTNVMGSTKRLAEMVLQALSHELAPVLFADSGNVARVNKTRFVMVRFG NVLGSSGSVIPRFRQQIKSGGPITVTHPNITRYFMTIPEAAQLVIQAGSMGRGGDVFVLDMGEPVKIAELAEKMVHLSGL NVCSEKNVHGDIAIEFTGLRPGEKLYEELLIGDNVVATQHP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 1e-82 | 44 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 9e-78 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PSEBR_a1571 | YP_004352776.1 | nucleotide sugar epimerase/dehydratase WbpM | VFG0029 | Protein | 8e-114 | 47 |
| PSEBR_a1571 | YP_004352776.1 | nucleotide sugar epimerase/dehydratase WbpM | VFG1300 | Protein | 1e-80 | 43 |
