Gene Information

Name : bgla_2g02730 (bgla_2g02730)
Accession : YP_004348261.1
Strain :
Genome accession: NC_015376
Putative virulence/resistance : Virulence
Product : type III secretion inner membrane protein SctR
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 362067 - 362717 bp
Length : 651 bp
Strand : -
Note : -

DNA sequence :

ATGGTTCAATTCAGTGACATTACCGGGCTGCTGCTGGTCGTCATCGCGATCAGCCTGCTGCCCTTCGTGGCGATGGTGGT
CACCTCCTACGCGAAGATCGTGGTGGTGCTGGGCCTGCTGCGCAACGCGCTGGGCGTGCAGCAGGTGCCGCCCAACATGG
TGCTGAACGGCATCGCGATCCTGGTGTCGATCTACGTGATGGCGCCGATCGGGATGCAGGCCTCGAAGGCACTGGAAGGG
CAGCAGCTCGCCTCGCAGCCGTCGCAGGCATTGATACAGGCGTTCGGCGCGGCGAAGGAGCCATTCCGGGCGTTTCTCGT
GAAGCACACGGCGGAGCGGGAGAAGCGCTTCTTCCTGCGCTCGGCGGCGGTGGTCTGGCCCAAGGAGCAGGCGCAGCAGT
TGAGCGAGAACGACCTGATCGTGCTGGCGCCCTCGTTCACGCTCTCCGAGCTGACCGATGCGTTCAAGATCGGCTTCCTG
CTGTATATCGCCTTCATCGTGGTCGACCTGATCATCGCCAACGTGCTGCTCGCGCTGGGCCTGAACCAGGTGACGCCGAC
CAACGTCGCGATTCCGTTCAAGCTGCTGTTGTTCGTGGTGATGGACGGCTGGTCGACGCTGATCCACGGTCTCGTGATGA
CCTACAAGTAA

Protein sequence :

MVQFSDITGLLLVVIAISLLPFVAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSIYVMAPIGMQASKALEG
QQLASQPSQALIQAFGAAKEPFRAFLVKHTAEREKRFFLRSAAVVWPKEQAQQLSENDLIVLAPSFTLSELTDAFKIGFL
LYIAFIVVDLIIANVLLALGLNQVTPTNVAIPFKLLLFVVMDGWSTLIHGLVMTYK

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
hrcR	BAB07862.1	HrcR	Virulence	Hrp PAI	Protein	2e-66	68
hrcR	AAP34349.1	HrcR	Virulence	Hrp PAI	Protein	2e-66	68
hrcR	NP_636600.1	type III secretion system protein	Virulence	Hrp PAI	Protein	2e-69	67
hrcR	AAD21321.1	HrcR	Virulence	Hrp PAI	Protein	3e-70	67
hrcR	NP_640757.1	type III secretion system protein	Virulence	Hrp PAI	Protein	5e-70	67
hrcR	YP_362153.1	type III secretion system protein	Virulence	Hrp PAI	Protein	5e-70	67
XC_3016	YP_244084.1	type III secretion system protein	Virulence	Hrp PAI	Protein	2e-69	67
hrcR	YP_198720.1	type III secretion system protein	Virulence	Hrp PAI	Protein	2e-70	67
lscR	AAO18040.1	LscR	Virulence	TTSS locus	Protein	9e-47	49
hrcR	NP_791222.3	type III secretion protein HrcR	Virulence	Hrp PAI	Protein	2e-34	44
hrcR	AAG33884.1	HrcR	Virulence	Hrp PAI	Protein	6e-35	44
hrcR	ABQ88359.1	HrcR	Virulence	Hrp PAI	Protein	2e-33	43
hrpW	AAB05075.1	HrpW	Virulence	Hrp PAI	Protein	2e-33	43
hrcR	AAB06005.2	HrcR	Virulence	Hrp PAI	Protein	5e-37	42
hrcR	AAT96146.1	HrcR	Virulence	T-PAI	Protein	5e-34	42
hrcR	AAT96200.1	HrcR	Virulence	T-PAI	Protein	4e-34	42
unnamed	AAL06354.1	EscR	Virulence	LEE	Protein	1e-37	42
hrcR	AAT96262.1	HrcR	Virulence	S-PAI	Protein	7e-35	41
hrcR	AAT96303.1	HrcR	Virulence	S-PAI	Protein	7e-35	41
hrcR	AAT96343.1	HrcR	Virulence	S-PAI	Protein	7e-35	41
hrcR	ABA47279.1	HrcR	Virulence	S-PAI	Protein	3e-36	41
YPO0270	YP_002345352.1	type III secretion system protein	Virulence	Not named	Protein	4e-39	41
escR	AAC31528.1	L0049	Virulence	LEE	Protein	2e-38	41
escR	ACU09473.1	type III secretion system protein EscR	Virulence	LEE	Protein	2e-38	41
ECs4583	NP_312610.1	type III secretion system protein	Virulence	LEE	Protein	8e-38	41
escR	AAK26700.1	EscR	Virulence	LEE	Protein	2e-38	41
escR	YP_003236103.1	T3SS structure protein EscR	Virulence	LEE	Protein	3e-38	41
escR	AAL57527.1	EscR	Virulence	LEE	Protein	2e-38	41
escR	NP_290283.1	type III secretion system protein	Virulence	LEE	Protein	3e-38	41
escR	CAC81847.1	EscR protein	Virulence	LEE II	Protein	2e-38	41
escR	YP_003223490.1	T3SS structure protein EscR	Virulence	LEE	Protein	3e-38	41
escR	CAI43889.1	EscR protein	Virulence	LEE	Protein	2e-38	41
escR	YP_003232138.1	type III secretion system protein	Virulence	LEE	Protein	3e-38	41
escR	AAC38369.1	EscR	Virulence	LEE	Protein	2e-37	41

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
bgla_2g02730	YP_004348261.1	type III secretion inner membrane protein SctR	VFG0188	Protein	7e-51	48
bgla_2g02730	YP_004348261.1	type III secretion inner membrane protein SctR	VFG0394	Protein	1e-49	47
bgla_2g02730	YP_004348261.1	type III secretion inner membrane protein SctR	VFG0044	Protein	1e-46	47
bgla_2g02730	YP_004348261.1	type III secretion inner membrane protein SctR	VFG0827	Protein	1e-38	41
bgla_2g02730	YP_004348261.1	type III secretion inner membrane protein SctR	VFG0715	Protein	9e-38	41