Gene Information

Name : Hipma_0180 (Hipma_0180)
Accession : YP_004339218.1
Strain : Hippea maritima DSM 10411
Genome accession: NC_015318
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 176178 - 176846 bp
Length : 669 bp
Strand : +
Note : COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789; IPR001867; KEGG: dma:DMR_37840 OmpR family two-component response regulator; PFAM: Signal transduction response regulato

DNA sequence : 
ATGAGGATTCTTTTAATTGAAGACGATAAAGAAACTGCCCATTTCATAATTAAAGGTCTATCTGAGAGTAACTATACGGT
TGACCATGCTGATAACGGAAAAGACGGTCTCTATCTAGCCGTGAACAGTAAATATGACCTTTTAATAATCGACAGAATGC
TACCCGGAATTGATGGGCTTAGCATAGTAAAAATGTTAAGAGCTGCAGACAAAAGAATGCCTATTTTGATACTTAGCGCT
CTTGGCAGTGTTGATGAAAAGGTGGAGGGCTTAAGAATTGGTGCTGACGATTACCTTCCTAAGCCGTATGCCTTTTCTGA
GCTCCTAGCCAGGATTGAGGTTTTACTCAGAAGAAACAAGGAATCTCAGGCTAAATTTTTGCAGGTTGCGGATTTAAAGA
TAAATCTTGAAAATTACACGGTCACAAGGGCAGCTAAGAAAATAGAGCTAAAACCTACTGAATTTAAGCTGTTAGTGTAT
CTTGTGCGCCATAGAGGTCAGGTTATAACCAGAACAATGCTGCTTGAAAACATTTGGGGATATAATTTTGACCCCCAAAC
CAATATTGTTGATGTTCATATAAGTAGATTAAGATCAAAAATTGATAGGGGGTTTGATAAAGAACTTATAAAAACCATAA
GGGGAATAGGATACAAGATTGAAGAGTAG

Protein sequence : 
MRILLIEDDKETAHFIIKGLSESNYTVDHADNGKDGLYLAVNSKYDLLIIDRMLPGIDGLSIVKMLRAADKRMPILILSA
LGSVDEKVEGLRIGADDYLPKPYAFSELLARIEVLLRRNKESQAKFLQVADLKINLENYTVTRAAKKIELKPTEFKLLVY
LVRHRGQVITRTMLLENIWGYNFDPQTNIVDVHISRLRSKIDRGFDKELIKTIRGIGYKIEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-47 44
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 5e-47 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hipma_0180 YP_004339218.1 winged helix family two component transcriptional regulator BAC0125 Protein 4e-50 49
Hipma_0180 YP_004339218.1 winged helix family two component transcriptional regulator BAC0111 Protein 3e-57 49
Hipma_0180 YP_004339218.1 winged helix family two component transcriptional regulator BAC0347 Protein 6e-52 47
Hipma_0180 YP_004339218.1 winged helix family two component transcriptional regulator BAC0308 Protein 3e-45 45
Hipma_0180 YP_004339218.1 winged helix family two component transcriptional regulator BAC0083 Protein 1e-48 44
Hipma_0180 YP_004339218.1 winged helix family two component transcriptional regulator BAC0638 Protein 2e-42 44
Hipma_0180 YP_004339218.1 winged helix family two component transcriptional regulator AE015929.1.gene1106. Protein 1e-34 42
Hipma_0180 YP_004339218.1 winged helix family two component transcriptional regulator BAC0197 Protein 3e-44 42
Hipma_0180 YP_004339218.1 winged helix family two component transcriptional regulator NC_010079.5776364.p0 Protein 2e-37 41
Hipma_0180 YP_004339218.1 winged helix family two component transcriptional regulator NC_002952.2859858.p0 Protein 2e-37 41
Hipma_0180 YP_004339218.1 winged helix family two component transcriptional regulator NC_007622.3794948.p0 Protein 2e-37 41
Hipma_0180 YP_004339218.1 winged helix family two component transcriptional regulator NC_003923.1003417.p0 Protein 2e-37 41
Hipma_0180 YP_004339218.1 winged helix family two component transcriptional regulator NC_013450.8614146.p0 Protein 2e-37 41
Hipma_0180 YP_004339218.1 winged helix family two component transcriptional regulator NC_002951.3238224.p0 Protein 2e-37 41
Hipma_0180 YP_004339218.1 winged helix family two component transcriptional regulator NC_007793.3914065.p0 Protein 2e-37 41
Hipma_0180 YP_004339218.1 winged helix family two component transcriptional regulator NC_002758.1121390.p0 Protein 2e-37 41
Hipma_0180 YP_004339218.1 winged helix family two component transcriptional regulator AE016830.1.gene1681. Protein 5e-42 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hipma_0180 YP_004339218.1 winged helix family two component transcriptional regulator VFG0596 Protein 5e-48 44