Gene Information

Name : Psed_0939 (Psed_0939)
Accession : YP_004331044.1
Strain : Pseudonocardia dioxanivorans CB1190
Genome accession: NC_015312
Putative virulence/resistance : Resistance
Product : Cys/Met metabolism pyridoxal-phosphate-dependent protein
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG0626
EC number : -
Position : 998360 - 999508 bp
Length : 1149 bp
Strand : +
Note : PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; KEGG: nml:Namu_4420 cystathionine gamma-synthase

DNA sequence : 
ATGCGCGGCTTCTCCACCAACGCCATCCACGCGGGCCAGGAGCCCGATCCGACGACCGGGGCGGTCATCGTCCCGATCCA
CCCGTCGTCGACCTTCGCCCAGGACGGCGTGGGCGGCACCCGCAACGGCTACGAGTACTCCCGCAGCGCCAACCCCACCC
GGACGGCGCTGCAGGAGTGTCTGGCCGCGCTGGAGGGCGGCCGGCACGCCTTCGCGTTCGGGTCCGGCATGGGTGCCTCC
GACGTGCTGCTGCGCGTCCTCGTCCGCCCGGGTGACCACGTCGTCATCCCGCACGACGCCTACGGCGGCACGTTCCGGCT
CGTCGACAAGATCCTGACCCAGTGGGGCGTCGAGTACTCGACGGTCGACCTCGCCGACGTCGACGCGCTGCGCGCCGCGC
TGCGGCCGACGACGAGGGTCGTGTGGTGCGAGACGCCGACCAACCCGCTGCTGGGCGTCGCCGACATCGCCGCGCTGGCC
GACGTGACCCGCGGGACAGAGGCGCGGCTCGTCGTCGACAACACGTTCGCCTCGCCCTACCTGCAGACCCCGCTGGCACT
GGGCGCCGACGTCGTCCTGCACTCGACGACCAAGTACGTCGGCGGGCACTCCGACGTCGTCGGCGGGGCCCTGGTGACCA
GCGACGACGGGCTCGCCGAGCAGCTCGCGTTCACCCAGAACTCGGTCGGCTCGGTACCCGGCCCGTTCGACACCTGGCTC
ACCCTGCGCGGGGTGAAGACGCTCGCGGTGCGCATGGAGCGGCACTGCGACAACGCCGAGCGCGTCGCCGAGATGCTCGC
CGCGCACCCCGCCGTCGCCCAGGTCTGCTACCCGGGGCTGGAGTCCCACCCGGGCCACGAGGTGGCCGCCAAGCAGATGC
GCCGGTTCGGCGGGATGGTGTCGTTCCGCGTCGCCGCCGGGCGGGAGGCCGCGCTCGCCGTGTGCGCCGGGACCGAGCTC
TTCACCCTGGCGGAGTCGCTCGGCGGCGTGGAGTCGCTGATCGAGCACCCGGGCGCGATGACGCACGCGTCGGTCGCGGG
CTCGGCGCTCGAGGTGCCCGACGACCTGGTCCGGCTCTCGGTCGGCATCGAGGACGTCGACGACCTGCTGGAGGACCTGC
GCGGCGCCCTGACCCGGATCCGATCCTGA

Protein sequence : 
MRGFSTNAIHAGQEPDPTTGAVIVPIHPSSTFAQDGVGGTRNGYEYSRSANPTRTALQECLAALEGGRHAFAFGSGMGAS
DVLLRVLVRPGDHVVIPHDAYGGTFRLVDKILTQWGVEYSTVDLADVDALRAALRPTTRVVWCETPTNPLLGVADIAALA
DVTRGTEARLVVDNTFASPYLQTPLALGADVVLHSTTKYVGGHSDVVGGALVTSDDGLAEQLAFTQNSVGSVPGPFDTWL
TLRGVKTLAVRMERHCDNAERVAEMLAAHPAVAQVCYPGLESHPGHEVAAKQMRRFGGMVSFRVAAGREAALAVCAGTEL
FTLAESLGGVESLIEHPGAMTHASVAGSALEVPDDLVRLSVGIEDVDDLLEDLRGALTRIRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SAR0460 YP_039909.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 5e-78 49
SAS0418 YP_042545.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 5e-79 49
metB YP_281510.1 cystathionine beta-lyase Not tested Not named Protein 3e-59 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psed_0939 YP_004331044.1 Cys/Met metabolism pyridoxal-phosphate-dependent protein BAC0207 Protein 1e-63 43