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Name : Psed_6547 (Psed_6547) Accession : YP_004336488.1 Strain : Pseudonocardia dioxanivorans CB1190 Genome accession: NC_015312 Putative virulence/resistance : Virulence Product : ATP-dependent chaperone ClpB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 6925746 - 6928361 bp Length : 2616 bp Strand : - Note : TIGRFAM: Chaperonin ClpB; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; KEGG: ami:Amir_6943 ATP-dependent chaperone ClpB; SMART: ATPase, AAA+ type, core DNA sequence : GTGGACGCCTTCAACCCCACCACCAAGACCCAGCAGGCGATCTCGGCCGCTGCCCAGGCGGCGACACTCGCCGGCAACCC GGATGTCGGTCCCACTCACCTGCTCGGCGCCTTGCTGGCCCAGGGTGACGGCATCGCCGCCCCCCTGCTCGAGGCCGTCG GCGCCGACGCCGCGGCGGTGCGCGCCGAGCTCACCCAGCTCGGTCAGCGGCTCCCCGCCGCGGCCGGCTCGACCGTCAGC GCCCCGCAGCTCTCGCGGGAGGCGCTGGCGGCGATCACCGCCGCCCAGCAGCTCGCCACCGAGATGGGCGACGAGTACGT CTCCACCGAGCACCTGCTCGTCGGCCTCGCCGACAAGGGCGGCCCGGTGGCCGACCTGCTGCGCCGCCACGGCGCCACCC CCGACGCGCTGCGCGAGGCGTTCACCAAGGTGCGCGGCTCGTCGCGGGTCACGAGTCCCGACCCGGAGGGCACCTACCAG GCGCTGGAGAAGTACGGCCAGGATCTCACGGCCCGGGCCCGCGAGGGCAAGCTCGACCCCGTGATCGGGCGTGACACCGA GATCCGTCGCGTCGTGCAGGTGCTCTCCCGGCGCACCAAGAACAACCCGGTGCTGATCGGCGAGCCGGGCGTCGGCAAGA CCGCGATCGTCGAGGGCCTGGCCCAGCGGATCGTGGCGGGCGACGTGCCCGAGTCGTTGCGCGACAAGCGCGTGGTCGCT CTCGACCTCGGCTCGATGGTGGCCGGCGCCAAGTACCGCGGCGAGTTCGAGGAGCGGCTCAAGGCCGTCCTCAAGGAGAT CACCGACTCCGCCGGTGAGATCATCACCTTCATCGACGAGCTGCACACGATCGTCGGCGCGGGCGCGACCGGCGAGGGCG CGATGGACGCGGGCAACATGATCAAGCCGATGCTCGCCCGTGGCGAGCTGCGGATGGTCGGCGCCACCACGCTCGACGAG TACCGCCAGCACATCGAGAAGGACCCCGCGCTGGAGCGGCGGTTCCAGCAGGTGCTGGTCGGCGAGCCGTCCGTCGAGGA CACCGTCGGCATCCTGCGTGGGCTCAAGGAGCGCTACGAGGTGCACCACGGCGTCCGGATCACCGACGCCGCGCTCGTCG CCGCCGCCACCCTGTCCGACCGCTACATCACCGCCCGGTTCCTGCCGGACAAGGCGATCGACCTCGTCGACGAGGCCGCG TCCCGGCTGCGCATGGAGATCGACTCCCGGCCCGTCGAGATCGACACCGTCGAGCGCGCGGTGCGCCGGCTGGAGATCGA GGAGATGGCGCTGGAGAAGGAGTCCGACGCCGCCTCGAAGGAGCGGCTCGCGGCTCTCCGTTCCGAGCTGGCCGAGAAGC GCGAGCAGCTGTCCGCGCTGACCGCCCGCTGGCAGAACGAGAAGGGCGCCATCGAGGCCACCCGCGAGCTCGCCGCCCAG CTCGAGCAGCTGCGTGGTGAGTACGAGCGCGCCGACCGCGACGGCGACCTCGGCCGGGCGTCCGAGCTGCTCTACGGCCG GATCCCGGCGCTGGAGAAGGAGCTCGCGGCCAAGACCGCCGACGTCGAGCGGACCGAGGACGTCATGCTCAAGGAGGAGG TCGGCCCCGACGACGTCGCCGACGTCGTCAGCGCGTGGACCGGTATCCCCGCGGGCCGCATGCTCGAGGGCGAGACGGCC AAGCTGCTGCGCATGGAGGACGAGCTCGGCAAGCGCGTCGTCGGTCAGGCCGAGGCCGTCCGCTCGGTGTCCGACGCGGT GCGCCGGGCACGGGCCGGGATCGCCGACGAGAACCGCCCGACCGGGTCGTTCCTGTTCCTCGGCCCGACCGGCGTCGGCA AGACCGAGCTCGCCAAGGCGCTGGCGGAGTTCCTGTTCGACGACGAGCGCGCCATGGTGCGCATCGACATGAGCGAGTAC TCCGAGAAGCACTCGGTGGCCCGCCTCGTCGGCGCCCCGCCCGGCTACGTCGGCTACGACCAGGGCGGCCAGCTCACCGA GGCCGTGCGGCGCCGCCCCTACACGGTGGTGCTGTTCGACGAGGTGGAGAAGGCCCACCCGGACGTCTTCGACACGCTGC TGCAGGTGCTCGACGACGGTCGGCTCACCGACGGCCAGGGCCGCACGGTCGACTTCCGCAACACGATCCTGGTGCTGACG TCGAACCTCGGCTCGCAGGCGATCGCCGACCCGGCACTCGACGACGCGGCCCGCAAGGACGCGGTCATGTCGGTGGTGCA GCGGCACTTCAAGCCGGAGTTCCTCAACCGGCTCGACGACGTCGTGGTCTTCCACGCGCTGTCGACCGAGGAGCTGACCC ACATCGTCGACATCCAGCTCGGCGTGCTGGGCAACCGGCTGGCGCGGCGGCGGCTCACGCTCGACGTGTCCGACGCGGCG CGCGAGTGGCTGGCCATGAACGGGTTCGACCCGGTCTACGGCGCGCGGCCGCTGCGCCGGCTGGTCCAGTCGTCGATCGG CGACCAGCTGGCCAAGGAGCTGCTCGCGGGGGCCGTCCGTGAGGGCGACACCGTCCGGGTCGACCTCGACCCGTCGGCCG CGGGCGGCACCGGCGGACTGATCGTCGGCCGGGCCAGCTCGCCCGTCACCGTCTGA Protein sequence : MDAFNPTTKTQQAISAAAQAATLAGNPDVGPTHLLGALLAQGDGIAAPLLEAVGADAAAVRAELTQLGQRLPAAAGSTVS APQLSREALAAITAAQQLATEMGDEYVSTEHLLVGLADKGGPVADLLRRHGATPDALREAFTKVRGSSRVTSPDPEGTYQ ALEKYGQDLTARAREGKLDPVIGRDTEIRRVVQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVAGDVPESLRDKRVVA LDLGSMVAGAKYRGEFEERLKAVLKEITDSAGEIITFIDELHTIVGAGATGEGAMDAGNMIKPMLARGELRMVGATTLDE YRQHIEKDPALERRFQQVLVGEPSVEDTVGILRGLKERYEVHHGVRITDAALVAAATLSDRYITARFLPDKAIDLVDEAA SRLRMEIDSRPVEIDTVERAVRRLEIEEMALEKESDAASKERLAALRSELAEKREQLSALTARWQNEKGAIEATRELAAQ LEQLRGEYERADRDGDLGRASELLYGRIPALEKELAAKTADVERTEDVMLKEEVGPDDVADVVSAWTGIPAGRMLEGETA KLLRMEDELGKRVVGQAEAVRSVSDAVRRARAGIADENRPTGSFLFLGPTGVGKTELAKALAEFLFDDERAMVRIDMSEY SEKHSVARLVGAPPGYVGYDQGGQLTEAVRRRPYTVVLFDEVEKAHPDVFDTLLQVLDDGRLTDGQGRTVDFRNTILVLT SNLGSQAIADPALDDAARKDAVMSVVQRHFKPEFLNRLDDVVVFHALSTEELTHIVDIQLGVLGNRLARRRLTLDVSDAA REWLAMNGFDPVYGARPLRRLVQSSIGDQLAKELLAGAVREGDTVRVDLDPSAAGGTGGLIVGRASSPVTV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 7e-107 | 44 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 5e-106 | 41 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 3e-106 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Psed_6547 | YP_004336488.1 | ATP-dependent chaperone ClpB | VFG2084 | Protein | 5e-112 | 42 |
| Psed_6547 | YP_004336488.1 | ATP-dependent chaperone ClpB | VFG2076 | Protein | 8e-115 | 42 |
