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Name : Psed_5653 (Psed_5653) Accession : YP_004335634.1 Strain : Pseudonocardia dioxanivorans CB1190 Genome accession: NC_015312 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 6028120 - 6029382 bp Length : 1263 bp Strand : + Note : TIGRFAM: Seryl-tRNA synthetase, class IIa; KEGG: sma:SAV_2294 seryl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Seryl-tRNA synthetase, class IIa, N-terminal DNA sequence : ATGCATGACCCGCGCGTCCTGCTCGACCCCGCCACCGACGCCGTGCGCAAGCTCGCCCGCCGCGGCTACTCCCTCGACCT CCCCGAGCTGGAGAAGCTCCTGACCGGGCGCAACTCCGCGATCCAACGGGGCGACGAGGCGCGCGCGGAGTCCAAGCGGG TCGCGACGTCGGTGAAGGGCGCGTCCGCCGAGGAGCGGCCCGCGCTGGTCGAGCGCGCCCGCGAGCTCAAGGGCATCGTC TCGGCCGCCGAGGACGAGCAGAAGGAGTTCGACGCGCAGCTGCAGGACCTGCTGCTGGGCATCCCGAACCTGCCGGCCGA CGAGTCGCCCGACGGGACCTCCGACGCCGACGCCGAGCTCGTCCGCACCTGGGGCGAGCCGCCCACGATCGAGTCGCCGG CCGACCACGTCGACATCGCCGAGAAGCTCGGCATCCTCGACCTGCCGCGCGCCACCAAGCTGTCGGGTCCGCGGTTCGCG GTCCTCAAGGGCAGGGGTGCGGCGCTGCAGCGCGCCATCGGCGCCTACCTGATCGACAAGGCGCTGGAGAACGGCTACAC CGAGTTCTCGGTGCCGTCGCTGGTCACGCGCCAGACCATGACCGGGACGGGGCAGCTGCCCAAGTTCGAGCAGGACCTGT TCCGCACCGAGGTCGCCGACCGGGAGCTCTTCCTCATCCCGACGGCCGAGGTTCCGCTCACCAACCTGCACGCGCGCGAG ACGCTCGACCTCGAGTCGCTCCCGCTGGCGTACACGGCGCACACGCCGTGCTTCCGCTCGGAGGCCGGCTCCTACGGCCG CGACACCCGTGGCCTGATCCGGATGCACGAGTTCGCCAAGGTCGAGCTGGTCCGCTTCGTCGACCCGGCCCGGTCGCGCG AGGAGCTCGACGTCCTGGTCGGGCACGCCGAGTCGGCGTTGCAGGGGCTCGGGCTGGCCTACCGCGTCGTCAAGCTCGCG GCGGGCGACACGGGCTTCTCGGCGGCGCTGACGTTCGACATCGAGGTGTGGCTGCCCAGCCAGGGCACCTACCGCGAGAT CTCCTCGTGCTCGGACTTCGGGGTGTTCCAGGCCCGCCGCGCCGGCATCCGTACGAAGGCCAAGGACGGCTCCCGCGGCT TCGCCGGCACCCTCAACGGGTCGGGCCTGCCGATCGGGCGCACGCTCGTCGCCGTCCTGGAGCAGGGCCAGCAGCCCGAC GGTTCGGTCCGGCTGCCCGAGGCGCTCGTCCCCTACGCCGGCTTCGCGACGCTGGAGCCCTGA Protein sequence : MHDPRVLLDPATDAVRKLARRGYSLDLPELEKLLTGRNSAIQRGDEARAESKRVATSVKGASAEERPALVERARELKGIV SAAEDEQKEFDAQLQDLLLGIPNLPADESPDGTSDADAELVRTWGEPPTIESPADHVDIAEKLGILDLPRATKLSGPRFA VLKGRGAALQRAIGAYLIDKALENGYTEFSVPSLVTRQTMTGTGQLPKFEQDLFRTEVADRELFLIPTAEVPLTNLHARE TLDLESLPLAYTAHTPCFRSEAGSYGRDTRGLIRMHEFAKVELVRFVDPARSREELDVLVGHAESALQGLGLAYRVVKLA AGDTGFSAALTFDIEVWLPSQGTYREISSCSDFGVFQARRAGIRTKAKDGSRGFAGTLNGSGLPIGRTLVAVLEQGQQPD GSVRLPEALVPYAGFATLEP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 1e-76 | 48 |
