Gene Information

Name : Psed_5242 (Psed_5242)
Accession : YP_004335231.1
Strain : Pseudonocardia dioxanivorans CB1190
Genome accession: NC_015312
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 5602806 - 5603462 bp
Length : 657 bp
Strand : -
Note : KEGG: ami:Amir_6380 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver do

DNA sequence : 
GTGACGACAGTCCTGCTGGCCGAGGACGACGCGGCGATCGCCGAGCCGCTCTCCCGCGCCCTGCAACGCGAGGGCTACCA
CGTCGACGTCGCCGACGACGGTACCGCCGCCCTCGAGCACGTCCGCAGTGGCGGAGTCGACCTCCTCGTCCTCGACCTGG
GCCTGCCGGGGATGGACGGCCTCGAGGTGTGCAGGCGGCTGCGCCTGGACTTCCCGGACCTGCCCGTCCTCATGCTCACC
GCCCGCACCGACGAGGTCGACTTCGTCGTCGGGCTCGACGCCGGTGCCGACGACTACGTCGGCAAACCGTTCCGGCTCGC
GGAGCTGCTCGCCCGGGTCCGCGCGCTGCTGCGCCGGCTCACGCCCGAGATGGTCGAGGTCGGCGGCGTCCGGATGGAGC
TGTCGGGCCGCCGGGTGCTCGTCGACGGCGTCGAGGTGGGCCTGGCCAACAAGGAGTTCGAGCTGCTGCGCGTGCTGATG
CTGCGCGCGGGCCAGGTCGTCACCCGCGAGGAGATCCTGCGCGAGGTGTGGAACGACCCCGACCTGAAGACGTCGAAGAC
CCTCGACATGCACATGTCGTGGCTGCGGCGCAAGATCGGCGGCGAGCGGCGGATCGCGACGGTCCGCGGGGTCGGTTTCC
GCTTCAACCACGACTGA

Protein sequence : 
MTTVLLAEDDAAIAEPLSRALQREGYHVDVADDGTAALEHVRSGGVDLLVLDLGLPGMDGLEVCRRLRLDFPDLPVLMLT
ARTDEVDFVVGLDAGADDYVGKPFRLAELLARVRALLRRLTPEMVEVGGVRMELSGRRVLVDGVEVGLANKEFELLRVLM
LRAGQVVTREEILREVWNDPDLKTSKTLDMHMSWLRRKIGGERRIATVRGVGFRFNHD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 9e-14 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psed_5242 YP_004335231.1 winged helix family two component transcriptional regulator AE000516.2.gene3505. Protein 3e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psed_5242 YP_004335231.1 winged helix family two component transcriptional regulator VFG1390 Protein 2e-21 44
Psed_5242 YP_004335231.1 winged helix family two component transcriptional regulator VFG0596 Protein 3e-14 41
Psed_5242 YP_004335231.1 winged helix family two component transcriptional regulator VFG1386 Protein 2e-16 41
Psed_5242 YP_004335231.1 winged helix family two component transcriptional regulator VFG1389 Protein 8e-19 41