Gene Information

Name : Psed_4936 (Psed_4936)
Accession : YP_004334930.1
Strain : Pseudonocardia dioxanivorans CB1190
Genome accession: NC_015312
Putative virulence/resistance : Unknown
Product : phosphate-transporting ATPase
Function : -
COG functional category : R : General function prediction only
COG ID : COG1123
EC number : 3.6.3.24
Position : 5298213 - 5299889 bp
Length : 1677 bp
Strand : -
Note : PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: fri:FraEuI1c_3109 ABC transporter related protein; SMART: ATPase, AAA+ type, core

DNA sequence :
GTGAACGGGTCCACCGACCCGCTGCTGCGGGTCCGGGATCTCGAGGTCTCCTACCGGGCGGCCGGCGCCTCGCTGCCCGC
ACTCCGCGGGGTGTCGCTCGACGTGGCGCCGGGCGAGGTGCTCGCGCTGGTCGGGGAGTCGGGGTCGGGCAAGTCGACGC
TGGCCCACGCCGTCGTCGGCCTGCTGCACGCCAACGCCACGGTCGGTGCCGGCAGCGTGCGGCTCGCGGGCGAGGAGGTG
CTGGGCCGCTCGGAGAAGGCGATGCGCACGGTCCGGGGCCGGGTCGCCGGGCTCGTCCCGCAGGACCCGACGGTGTCGCT
CAACCCGGTGCGCCGCATCGGGCCGCAGGTCGCCGAGGCGCTGCGGGTGCACGGCCTGGCCACGCGGCGCAGCGCCCCGG
TGGCGGCCGAGGAGCTGCTCGCCAGGGCCGGCCTGCCGGACCCCGGCGTGCGGGCCCGGCAGTACCCGCACGAGCTGTCG
GGCGGCATGCGCCAGCGGGTGCTGATCGCCATCGCGATCGCCGCGGGCCCCGCGCTGCTCATCGCCGACGAGCCCACGAG
CGCGCTCGACGCCACCGTCCAGCGGCGCATCCTCGACCACCTCGAGGAGCTGACGCGCGAGTCCGGCACCGCGGTCCTGC
TCGTCACCCACGACCTGGGTGTCGCGGCCGACCGGGCCGACCGGATCGCGGTCATGTCCGGTGGGCGGCTCGTCGAGCGG
GGGCCGACCGAGCAGATCCTCGCCGGGCCGACCGACCCCTACACGCGCAGGCTGCTCGCCGCGGCACCCGGCCTCGCGAG
CGCGACCGCCGCGGCCCGCGCGCCGGCCCGGCCCGTGGTCGCGACCCCTGCGGTGTCGGGGGCGCCCGACGAGACACCGC
TGCTCGTGGTCCGCGACCTGGTCAAGGACTTCCCGCTGCCGCGCTCGGCCGGCCGCCGGGCGGTGCACCGCGCTGTCGAC
GGGGTGAGCTTCGAGATCCGTCGCGGCGAGACCCTCGGGCTGGTCGGAGAGTCCGGATCGGGGAAGTCGACCACCGCGCG
GCTCGTGCTCCGGCTGGCCGATCCGACCTCGGGCACCGTCGAGTTCGACGGCACCGACGTCACCACGGTCCGCGGTGCCG
CGTGGCGGGAGCTGCGGCGCCGGGCGCAGCTGGTGTACCAGAACCCGTACGCGTCGCTGGACCCGCGCTTCACGATCGCC
GACGTGGTCGAGGAGCCGCTGCGCGCCTTCAGGGTCGGCACGCCGGCCGAGCGCCGCGAGCGCGTCGCGGAGCTGGTGGA
CCGGGTCGCGCTCCCGGCGTCGGTGCTGGCGCGCCGGCCCGTCGAGCTCTCCGGCGGGCAGCGGCAGCGGGTCGCGATCG
CGCGGGCGCTCGCGCTGCGTCCCGACCTCGTCGTCTGCGACGAGCCGGTCTCCGCGCTCGACGTCTCCGTCCAGGCGCAG
GTGCTCGACCTGCTGGCCGAGCTGCAGGCCGGGCAGGGCCTCGCGTACCTGTTCATCTCCCACGACCTCGCCGTCGTGCG
CCGGATCGCCCACCGCGTCGGCGTGATGCGCGACGGGGCGCTGCTCGAGCTCGCCTCCACCGAGGAGCTCTTCGCCTCGC
CGCGCGAGGACTACACCCGTGAGCTGCTGGCGGCCGTCGCCGGCAGCCGTTCGCGAAAGGTCCACGCAGCCTCATGA

Protein sequence :
MNGSTDPLLRVRDLEVSYRAAGASLPALRGVSLDVAPGEVLALVGESGSGKSTLAHAVVGLLHANATVGAGSVRLAGEEV
LGRSEKAMRTVRGRVAGLVPQDPTVSLNPVRRIGPQVAEALRVHGLATRRSAPVAAEELLARAGLPDPGVRARQYPHELS
GGMRQRVLIAIAIAAGPALLIADEPTSALDATVQRRILDHLEELTRESGTAVLLVTHDLGVAADRADRIAVMSGGRLVER
GPTEQILAGPTDPYTRRLLAAAPGLASATAAARAPARPVVATPAVSGAPDETPLLVVRDLVKDFPLPRSAGRRAVHRAVD
GVSFEIRRGETLGLVGESGSGKSTTARLVLRLADPTSGTVEFDGTDVTTVRGAAWRELRRRAQLVYQNPYASLDPRFTIA
DVVEEPLRAFRVGTPAERRERVAELVDRVALPASVLARRPVELSGGQRQRVAIARALALRPDLVVCDEPVSALDVSVQAQ
VLDLLAELQAGQGLAYLFISHDLAVVRRIAHRVGVMRDGALLELASTEELFASPREDYTRELLAAVAGSRSRKVHAAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
dppD YP_005160017.1 putative peptide ABC transport system ATP-binding protein Not tested Not named Protein 1e-110 52
oppDF2 YP_005681814.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 3e-68 41
oppDF2 YP_005683914.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 3e-68 41
cpfrc_01561 YP_003783961.1 hypothetical protein Not tested PiCp 6 Protein 3e-68 41
oppDF2 YP_005686002.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 3e-68 41