|
Name : Psed_4116 (Psed_4116) Accession : YP_004334132.1 Strain : Pseudonocardia dioxanivorans CB1190 Genome accession: NC_015312 Putative virulence/resistance : Virulence Product : ATPase Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 4428832 - 4430928 bp Length : 2097 bp Strand : + Note : KEGG: nda:Ndas_1369 ATPase AAA-2 domain protein; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core DNA sequence : GTGGCACAGGACCGACCCGACTTCGGCCCGTTCGACGAGATCGTCGAACGGCTCATCGGCAATCTCGGCACGGCGCTCGG CGACATGGGCCGTGGCGAGGGCGGCTCGCCGTTCGGCGGCCTCGGCGACCTCGGCTTCGGGGACCTGGGCGGCGAGCGGC GCACGTCCGAGGCGGGCCCGCAGACCCCGCCCGCCGGTGCCCCGCGGGCCCGCACCCCCCGGCTCGACCGGTTCGCCCGC GACCTCACCGCCGCCGCCGCGGCCGGCGAGCTCGATCCCGTCATCGGCCGCGAGGCCGAGATCGACCAGGTGCTGGAGGT GCTCGCCCGGCGGACCAAGAACAACCCGGTGCTGGTCGGCGATCCGGGCGTCGGCAAGACGGCCATCGTCGAGGGGATCG CCCACCGCGTCGCCGACGGCGACGTGCCGCCCGCGCTGCAGGGCGTCCGGGTCCTCGCGCTCGACCTCGCCGGGATGGTC GCGGGCACCCGCTACCGCGGTGACTTCGAGCAGCGGCTGACCCGGGTGATCGACGAGATCGTCGCCGCGCGCCGGCAGGT CGTCGTGTTCGTCGACGAGCTGCACGCCGTCGTCGGCGCGGGCTCGGCCGAGGGCCAGGCCATGGACGCGGGCACCCTGC TCAAGCCCGCGCTCGCCCGCGGCGACCTGCAGCTCGTCGGGGCCACGACGGCCGGGGAGTACCGCAGGCACATCGAGCGC GACCCCGCGCTGGAACGCAGGCTTGCCCCGGTGCGCGTCGCGGAGCCGGACGTGGCCGCCACAGTCGCGATCCTGCGCGG GCTGCGGGAGCGCTACGAGGCCCACCACGACGTCGCGATCGACGACGCCGCGCTCGTCGCCGCCGCCGAGCTCTCCGACC GGCACATCACCGACCGGTTCCTGCCCGACAAGGCGATCGACCTCGTCGACCGGGCCGGGGCCCGCGCCCGGATCCGGGCG TCCCGCGGCCGGCCGGCGGGGGCCGTCGAAGAGCTGCGCCGGGCCCGCGAGGTCGCCGTCGACGCCGAGGACTACGAGCG GGCACTGCAGCTCACCCGGGAGATCGACGCCGCCGAGGCCGGTGGCGGCACGATCCGCGGCGGTCGCGTCACCGTCACCG CCGACGACGTCGCCCGGCTGCTCGCCGAGACCACCGGCATCCCCGTCGCCCGGCTCACCGCCGACGACCGCCGCTCGCTG CTGGGGCTCGAGGACACGTTGCGCCGCAGGATCGTCGGCCAGGACGAGGCCGTCGGGATCGTCGCCGACGCCGTCCGAGC CGGGCGGGCCGGGCTCGCGCACCCCGGCCGGCCGGTCGGGTCGTTCCTGTTCCTCGGGACGACGGGCGTCGGCAAGACCG AGCTGGCGCGGACGCTCGCCGACGCGCTCTTCGGCGGCGAGGACGCGTTGCTGCGCTTCGACATGAGCGAGTACACCGAC CGGGCGAGCGCGTACCGGCTGGTCGGGGCCCCTCCCGGGCACGCCGGGTTCGACGAGCCGGGCCAGCTCACCGAGGCCGT GCGGCGCACCCCCTACGCCGTCGTGCTGATCGACGAGGTCGAGAAGGCCCACCCCGACGTCGTGTCGACGCTGCTGCAGG TGCTCGACGCGGGCCGGCTCACCGACTCGCACGGGCGCACGGTCGACTTCACCCGCACGGTCGTGGCGCTCACCAGCAAC CTGGGCGCGCCGCCGCTGCTCGCCGCCGCAGGCCCGGCCACGCGCGACACGCTGCTGGCCGCCGCCCGCGCGCACTTCCG CCCGGAGTTCCTCAACCGGGTCGACGACGTCGTCGCGTTCCGCTCGCTCGACGACGCCGACCTGCGGCGGATCACCACGT TGCTGCTCGCGGAGACCACCGCCCGGCTGGCGGCACAGCACATCACCCTCGACGTCAGCTCGGCCGCGGTCGACTGGCTC GCCCGCCGCGGCCACGAGCCCGGGCTCGGGGCGCGGCCGTTGCGCCGCACGGTCGGCCGCGAGCTGGAACGGCGGCTGTC GCGGCTGCTCATCGCGCAGGACCTCGGGGCCGGGGCCCGGGTGCTCGTCGACGTCACCGGTCCCGACGCGACGGCGCTCA CGCTCACCGCGACCTGA Protein sequence : MAQDRPDFGPFDEIVERLIGNLGTALGDMGRGEGGSPFGGLGDLGFGDLGGERRTSEAGPQTPPAGAPRARTPRLDRFAR DLTAAAAAGELDPVIGREAEIDQVLEVLARRTKNNPVLVGDPGVGKTAIVEGIAHRVADGDVPPALQGVRVLALDLAGMV AGTRYRGDFEQRLTRVIDEIVAARRQVVVFVDELHAVVGAGSAEGQAMDAGTLLKPALARGDLQLVGATTAGEYRRHIER DPALERRLAPVRVAEPDVAATVAILRGLRERYEAHHDVAIDDAALVAAAELSDRHITDRFLPDKAIDLVDRAGARARIRA SRGRPAGAVEELRRAREVAVDAEDYERALQLTREIDAAEAGGGTIRGGRVTVTADDVARLLAETTGIPVARLTADDRRSL LGLEDTLRRRIVGQDEAVGIVADAVRAGRAGLAHPGRPVGSFLFLGTTGVGKTELARTLADALFGGEDALLRFDMSEYTD RASAYRLVGAPPGHAGFDEPGQLTEAVRRTPYAVVLIDEVEKAHPDVVSTLLQVLDAGRLTDSHGRTVDFTRTVVALTSN LGAPPLLAAAGPATRDTLLAAARAHFRPEFLNRVDDVVAFRSLDDADLRRITTLLLAETTARLAAQHITLDVSSAAVDWL ARRGHEPGLGARPLRRTVGRELERRLSRLLIAQDLGAGARVLVDVTGPDATALTLTAT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 1e-124 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Psed_4116 | YP_004334132.1 | ATPase | VFG0079 | Protein | 3e-123 | 50 |
| Psed_4116 | YP_004334132.1 | ATPase | VFG0080 | Protein | 1e-114 | 49 |
