|
Name : Psed_3067 (Psed_3067) Accession : YP_004333119.1 Strain : Pseudonocardia dioxanivorans CB1190 Genome accession: NC_015312 Putative virulence/resistance : Unknown Product : Tex-like protein Function : - COG functional category : K : Transcription COG ID : COG2183 EC number : - Position : 3269021 - 3271516 bp Length : 2496 bp Strand : + Note : KEGG: fra:Francci3_0217 RNA binding S1; PFAM: Tex-like protein, N-terminal; Ribosomal protein S1, RNA-binding domain; SMART: Resolvase, RNase H-like fold; RNA-binding domain, S1 DNA sequence : GTGACGGACAAGGCAGCTTCGGTACAGCAGCGGATCGCCGACGAGCTCGGCGTGCGCCCGCACCAGGTCACCGCCGCGGT GGACCTCCTCGACGGCGGCGCGACCGTGCCGTTCATCGCCCGCTACCGCAAGGAAGCCACGGGAGCGCTCGACGACGCCC AGCTGCGCACCCTCGAGGAGCGGCTGCGCTACCTGCGGGAGCTCGAGGAGCGCCGCGAGGCCGTCCTCGAGTCGATCCGC GGCCAGGGCAAGCTCGACGAGGCCCTCGAGGCGCGCATCCTCGCCGCCGACTCGAAGGCCCGGCTCGAGGACATCTACCT GCCCTACAAGCCCAAGCGCCGCACCAAGGCGATGATCGCCCGCGAGCAGGGCCTGGAACCGCTCGCCGACGCGCTGCTGG CCGACCCGGCGCTCGACCCGACCGCCACGGCGGAGCCCTACGTCACCGGCGAGGTCGCCGACGCCGCGGCCGCCCTGGAG GGTGCCCGCTCGATCCTGGTCGAGCGCTTCGCCGAGGACGCCGACCTGATCGGCGGGCTGCGGGAGCGCATGTGGAACCA GGGCCGGCTGGTGTCGAAGGTGCGCGAGGGCAAGGAGCACGACCAGGCCGCCGCGAAGTTCGCCGACTACTTCGACTTCT CCGAGGCGTTCACCAGCCTGCCCAGCCACCGCATCCTCGCGGTCTTCCGCGGCGAGAAGGAGGAGGCGCTCGACGTCGCG CTGGAACCCGCGGCCGAGCCCGCCGAGCCGGGCGTGCCGACGGAGTACGAGCGGCTCATCGCCGCCAACTTCGGCATCGC CGACGAGGGCCGCCCGGCCGATCGCTGGCTCTCCGACGTCGTGCGCTGGGCCTGGCGCACCCGCATCCTGCTGCACCTGG GCATCGACATCCGGGTCCGGCTGCGCACCGCCGCGGAGGAGGCCGCCATCGGCGTGTTCGCGATGAACCTGCGCGACCTG CTGCTCGCGGCACCCGCGGGCACGCGCGCGACGATGGGCCTCGACCCGGGGCTGCGCACCGGGGTCAAGGTCGCGGTCGT CGACGCGACGGGCAAGGTCGTCGCCACCGACACGATCTACCCGCACGCGCCGCGCAACGACCGCAAGGGCTCGCTCGCGA CGCTGACCCGGCTCGCGGCGGCGCACGAGGTCGATCTCATCGCCATCGGCAACGGCACCGCGTCCCGCGAGACCGACGCG CTCGCCGCCGAGCTCATCGCCGCCAACCCCGGCCTCAAGCTGACGAAGGTCATGGTCAGCGAGGCCGGGGCGTCGGTGTA CTCGGCGTCGGCCTACGCGTCGGCCGAGCTGCCCGACCTCGACGTGTCGCTGCGCGGCGCGGTGTCGATCGCGCGCCGGC TGCAGGACCCGCTCGCCGAGCTCGTCAAGATCGACCCGAAGTCCATCGGCGTCGGTCAGTACCAGCACGACCTGCCGGAG TCGTCGCTGTCGCGCTCGCTCGACGCCGTCGTCGAGGACTGCGTGAACGCCGTCGGCGTCGACCTCAACTCGGCGTCGCC ACCGCTGCTGCGCCGGGTCTCGGGGATCAGCGAGTCGCTGGCGGCGGCGATCGTCGCGCACCGCGACGCCAACGGCCCGT TCCGCACCCGCACCGCCCTGTCCGACGTGCCGCGCCTGGGCCCGAAGGCCTTCGAGCAGTGCGCGGGCTTCCTGCGCATC CGCGGCGGCGACGAGCCGCTCGACGTCTCCGGCGTGCACCCCGAGTCCTACCCCGTGGTCCGGCGCATGGTCGAGGCGGC GAAGACGCCGATCGGCGAGCTGATCGGCAACACCCGGGTCCTGAAGACGTTGCAGCCCAAGCGGTTCGTCGATGACACCG TCGGCCTGCCGACGGTCACGGACATCCTCGCCGAGCTGGAGAAGCCGGGCCGTGACCCGCGCCCGGCGTTCCGCACCGCG ACGTTCGCCGAGGGCGTCCACACGATCGGCGACCTGCGGCCCGGGATGCTGCTGGAGGGCGTGGTCACCAACGTCGCGGC GTTCGGCGCGTTCGTCGACGTGGGCGTGCACCAGGACGGCCTCGTGCACGTCTCGGCGATGTCGACGAGCTTCGTGTCCG ACCCGCGCGAGGTCGTGAAGTCCGGCGACGTCGTGCGGGTCAAGGTGCTCGACGTCGACGAGCCGCGCAAGCGCATCTCG CTCACGCTGCGTCTCGACGACGAGCCCGGCGCGGGCCGCACCGGCGGTCGGCGCACGGGCGACGGCGGCCGGAGCGACGG CGGTGAGCGGGGTGGCCGCGGCGGTGACCGGAGCCAGGGGGACCGGAGCCAGGGGGACCGGCGCCAGGGCGACCGGCGCG GCGGGGACGTGCGCAAGGGTGACCAGCGCGGTGCCCGCGGCGGCGACCGGCGCGGCGGCGAGCGCGGCGGCAACGACCAG CGAGCTGGTCGTTCCGGCGGGCAGGCGCGGCCGCGCCCGGAACCGGCCAACAACGCGATGGCCGAGGCGCTGCGCCGCGC CGGTTTCGGCAAGTAG Protein sequence : MTDKAASVQQRIADELGVRPHQVTAAVDLLDGGATVPFIARYRKEATGALDDAQLRTLEERLRYLRELEERREAVLESIR GQGKLDEALEARILAADSKARLEDIYLPYKPKRRTKAMIAREQGLEPLADALLADPALDPTATAEPYVTGEVADAAAALE GARSILVERFAEDADLIGGLRERMWNQGRLVSKVREGKEHDQAAAKFADYFDFSEAFTSLPSHRILAVFRGEKEEALDVA LEPAAEPAEPGVPTEYERLIAANFGIADEGRPADRWLSDVVRWAWRTRILLHLGIDIRVRLRTAAEEAAIGVFAMNLRDL LLAAPAGTRATMGLDPGLRTGVKVAVVDATGKVVATDTIYPHAPRNDRKGSLATLTRLAAAHEVDLIAIGNGTASRETDA LAAELIAANPGLKLTKVMVSEAGASVYSASAYASAELPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDLPE SSLSRSLDAVVEDCVNAVGVDLNSASPPLLRRVSGISESLAAAIVAHRDANGPFRTRTALSDVPRLGPKAFEQCAGFLRI RGGDEPLDVSGVHPESYPVVRRMVEAAKTPIGELIGNTRVLKTLQPKRFVDDTVGLPTVTDILAELEKPGRDPRPAFRTA TFAEGVHTIGDLRPGMLLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSTSFVSDPREVVKSGDVVRVKVLDVDEPRKRIS LTLRLDDEPGAGRTGGRRTGDGGRSDGGERGGRGGDRSQGDRSQGDRRQGDRRGGDVRKGDQRGARGGDRRGGERGGNDQ RAGRSGGQARPRPEPANNAMAEALRRAGFGK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| NMB0075 | NP_273139.1 | transcriptional accessory protein Tex | Not tested | IHT-A | Protein | 1e-173 | 62 |
