Gene Information

Name : Psed_3039 (Psed_3039)
Accession : YP_004333091.1
Strain : Pseudonocardia dioxanivorans CB1190
Genome accession: NC_015312
Putative virulence/resistance : Virulence
Product : ABC transporter permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 3239022 - 3239906 bp
Length : 885 bp
Strand : +
Note : PFAM: ABC-3; KEGG: rha:RHA1_ro07269 zinc ABC transporter permease

DNA sequence : 
GTGAACCCGATCGACCTGATCGTCGAGCCGCTCTCGTACGGCTTCATGGTCCGTGCGCTGGTCACGACCGTCGTCGCCGC
CGTGGTGTGCGCGTTGCTGTCCTGCTGGCTGGTGCTCGTCGGCTGGTCGCTGATGGGCGACGCCGTGTCCCACGCGGTGC
TGCCCGGCGTGGTGCTCGCCTACGTGCTCGGTGCGCCCTTCGCGCTCGGGGCCGTCGTGTTCGGGTTCCTGGCGGTCGGG
CTCATCGGGGCGATCCGCGACACCAGCCGGGTCAAGGAGGACGCGGCGATCGGGATCGTGTTCACCACGCTGTTCGCGCT
CGGCCTGGTGCTGATCTCGGTCACCCCCAGCCAGACCGACCTCAACCACATCGTGTTCGGCAACGTCCTGGGCGTCTCGG
TCGGCGACCTCGTCCAGGTCGCCGCGCTCGGCGCGGTGGTCGCGGCGGCGCTGCTGTACAAGCGTCGCGACCTCGTGCTC
TACGCGTTCGACCCCGGGCACGCCCACGCGATCGGGCTCTCGCCCCGCAGGCTCGGCGCGCTGCTGCTGGGGCTGCTCGC
GCTCACCGCGGTCGTGGCGCTGCAGGTGGTCGGCGTCATCCTGGTCGTCGCGATGCTGATCCTGCCCGGGGCGACGGCGC
AGCTGCTCACCGACCGGTTCTCCCGGATGCTGCTGATCGCGCCGGTGCTGTCCGTCGTGTGTGCGACGGTGGGGCTGTAC
CTGAGCTACTGGCTCGATGCCGCGCCGGGCGGCCTGGTCGTCGTCACCCAGGGCGCGGCCTTCGCGCTGGTGTACCTGTT
CGGCCCCCGGCACGGCCTGCTCACCAGGCGGGCCCGCCGCGACGGCGCGGCCCCGCCCGCCGCGGTGGGCCGCGTCGAGG
GCTGA

Protein sequence : 
MNPIDLIVEPLSYGFMVRALVTTVVAAVVCALLSCWLVLVGWSLMGDAVSHAVLPGVVLAYVLGAPFALGAVVFGFLAVG
LIGAIRDTSRVKEDAAIGIVFTTLFALGLVLISVTPSQTDLNHIVFGNVLGVSVGDLVQVAALGAVVAAALLYKRRDLVL
YAFDPGHAHAIGLSPRRLGALLLGLLALTAVVALQVVGVILVVAMLILPGATAQLLTDRFSRMLLIAPVLSVVCATVGLY
LSYWLDAAPGGLVVVTQGAAFALVYLFGPRHGLLTRRARRDGAAPPAAVGRVEG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-31 47
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-31 47
sitD NP_461785.1 permease Virulence SPI-1 Protein 1e-30 47
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 8e-31 47
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-31 47
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 6e-34 46
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 8e-34 46
sitC NP_461784.1 permease Virulence SPI-1 Protein 8e-34 46
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 8e-34 46
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 8e-34 46
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 2e-24 43
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 1e-24 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psed_3039 YP_004333091.1 ABC transporter permease BAC0442 Protein 1e-29 50
Psed_3039 YP_004333091.1 ABC transporter permease BAC0352 Protein 5e-31 47
Psed_3039 YP_004333091.1 ABC transporter permease BAC0351 Protein 4e-34 46
Psed_3039 YP_004333091.1 ABC transporter permease BAC0441 Protein 1e-31 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psed_3039 YP_004333091.1 ABC transporter permease VFG0528 Protein 4e-31 47
Psed_3039 YP_004333091.1 ABC transporter permease VFG0527 Protein 4e-34 46