Gene Information

Name : Psed_3038 (Psed_3038)
Accession : YP_004333090.1
Strain : Pseudonocardia dioxanivorans CB1190
Genome accession: NC_015312
Putative virulence/resistance : Virulence
Product : sulfate-transporting ATPase
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : 3.6.3.25
Position : 3238267 - 3239025 bp
Length : 759 bp
Strand : +
Note : PFAM: ABC transporter-like; KEGG: bfa:Bfae_31320 ATPase component of Mn/Zn ABC-type transporter; SMART: ATPase, AAA+ type, core

DNA sequence : 
GTGAGCCCCGCCGCGGTCGACACCGCCGCGATCGAGGTCGAGGGGCTCACCGTCAGGTACGGCCCCCTCGTGGCGCTCGA
CGGGGTCTCGCTGCGGCTGGCACCCGGGACGGTGTGCGGTCTGATCGGGATGAACGGGTCGGGCAAGTCGACGCTGTTCA
AGTCCATGACCGGGCTGCTGCGGGCCGATTCGGGCCGGGTCCGGCTCGGCGGGCACGAGCCGGCCACGGCGCGCAGGCGG
GGGCTGGTCGGCTACGTGCCGCAGGCCGAGGCCGTCGACTGGGCGTTCCCGGTGTCGGTGCGCGACGTGGTGATGATGGG
CCGGTACGGGCGGCTGGGCCCCACCCGGCGGGCCCGCGAGGCGGACCGCGCCGCCGTCGCCGCGGCCCTGGCCAGGGTCG
AGCTCGCCGATCTCGCCGACCGGCAGATCGGGCAGCTGTCGGGCGGGCAGCGCAAGCGGGCGTTCGTCGCGCGCGGGATC
GCGCAGGAGGCCGAGGTCCTGCTGCTCGACGAGCCCTTCGCGGGGGTGGACAAGCGGTCGGAGGCGACGATGTCGTCGCT
GCTCGCCGAGCTCGCCGCAGCCGGCCGCACGGTCCTGGTGGCGACCCACGACCTGCAGGCACTCCCGGCGCTCGCCGACG
AGGCCGTACTGCTGCGCCGTCGGGTACTGCTGCACGGGCCCGTCGAGGAGGTCCTGCGCCCGGAGAACCTCGCCCGCGCG
TTCGGCATCGACCCGCTGGAGCAGGGGAGCCGGACGTGA

Protein sequence : 
MSPAAVDTAAIEVEGLTVRYGPLVALDGVSLRLAPGTVCGLIGMNGSGKSTLFKSMTGLLRADSGRVRLGGHEPATARRR
GLVGYVPQAEAVDWAFPVSVRDVVMMGRYGRLGPTRRAREADRAAVAAALARVELADLADRQIGQLSGGQRKRAFVARGI
AQEAEVLLLDEPFAGVDKRSEATMSSLLAELAAAGRTVLVATHDLQALPALADEAVLLRRRVLLHGPVEEVLRPENLARA
FGIDPLEQGSRT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 4e-42 47
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 4e-42 47
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 6e-43 47
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-43 47
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 5e-43 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psed_3038 YP_004333090.1 sulfate-transporting ATPase BAC0350 Protein 3e-43 47
Psed_3038 YP_004333090.1 sulfate-transporting ATPase BAC0440 Protein 7e-46 45
Psed_3038 YP_004333090.1 sulfate-transporting ATPase BAC0400 Protein 4e-37 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psed_3038 YP_004333090.1 sulfate-transporting ATPase VFG0526 Protein 3e-43 47