Gene Information

Name : Psed_3037 (Psed_3037)
Accession : YP_004333089.1
Strain : Pseudonocardia dioxanivorans CB1190
Genome accession: NC_015312
Putative virulence/resistance : Virulence
Product : metal ion ABC transporter periplasmic subunit
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 3237377 - 3238270 bp
Length : 894 bp
Strand : +
Note : PFAM: ABC transporter metal-binding lipoprotein; KEGG: nfa:nfa24340 ABC transporter substrate-binding protein

DNA sequence : 
GTGGCGGTGCTCGCGGCGCTGCTCGTCGTGGTGGCCGGCTGTGCCGGCACCGGCCGGGCGCAGGACGCCGACCGGCCACT
GGTCCTGACCACGTTCACGGTGCTCGCCGACATCGCCCGCAACGTGGCGGGGGAGCACCTGCGAGTCGAGTCGATCACCA
AGCCCGGCGCCGAGATCCACGGCTACGAGCCCACCCCCGGCGACATCCGCAAGGCCGCCGAGGCCGACCTCGTCATCGAC
AACGGGCTGAACCTCGAGGTGTGGTTCGAAAAGTTCGTGGCCGACCTGGCGGTGCCGCACGTCGTCGTGTCGGAGGGCGT
CGCGGTCGTCGACATCACCGAGGACGCCTACGCCGGCAAGCCGAACCCGCACGCGTGGATGAGCCCGACGAACGTGGTCC
GCTACGTCGACAACATGGTCGTCGCGTTCGCCGCGCTCGACCCCGCGCACGCCGACGCGTTCGCGGCCAACGCCGGCTCG
TACAAGGCCGAGCTGCGCCGCGTCCACGACGAGCTCGTCACGGCACTGGCGACGCTGCCACCCGCCCAGCGGGCGCTCGT
GACCTGCGAGGGCGCGTTCTCCTACCTCGCCAGGGACACCGGGCTGACCGAGAAGTACATCTGGCCGGTCAACGCCGAGC
AGCAGGCCACGCCCCAGCAGGTCACCTCGGCCATCGCATTCGTGACCGCCAACGACGTGCCCGCGGTCTTCTGCGAGTCG
ACGGTGTCCGACAGCGCGATGCGGCAGGTTGCCGACGCCTCCGGCGCCCGGTTCGGCGGCATCCTCTACGTCGACTCGCT
CTCCGGCCCCGACGGTCCGGTCCCGACCTATCTCGACCTCATCCGCCACGACACCCGGACGATCATCGCGGGCCTCACCG
GGGTGGCGGTGTGA

Protein sequence : 
MAVLAALLVVVAGCAGTGRAQDADRPLVLTTFTVLADIARNVAGEHLRVESITKPGAEIHGYEPTPGDIRKAAEADLVID
NGLNLEVWFEKFVADLAVPHVVVSEGVAVVDITEDAYAGKPNPHAWMSPTNVVRYVDNMVVAFAALDPAHADAFAANAGS
YKAELRRVHDELVTALATLPPAQRALVTCEGAFSYLARDTGLTEKYIWPVNAEQQATPQQVTSAIAFVTANDVPAVFCES
TVSDSAMRQVADASGARFGGILYVDSLSGPDGPVPTYLDLIRHDTRTIIAGLTGVAV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-68 58
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 3e-68 58
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 3e-68 58
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 3e-68 58
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 2e-68 58

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psed_3037 YP_004333089.1 metal ion ABC transporter periplasmic subunit BAC0349 Protein 1e-68 58
Psed_3037 YP_004333089.1 metal ion ABC transporter periplasmic subunit BAC0439 Protein 1e-59 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psed_3037 YP_004333089.1 metal ion ABC transporter periplasmic subunit VFG0525 Protein 1e-68 58