Gene Information

Name : Psed_2914 (Psed_2914)
Accession : YP_004332967.1
Strain : Pseudonocardia dioxanivorans CB1190
Genome accession: NC_015312
Putative virulence/resistance : Virulence
Product : iron-chelate-transporting ATPase
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : 3.6.3.34
Position : 3078800 - 3079633 bp
Length : 834 bp
Strand : +
Note : PFAM: ABC transporter-like; KEGG: sro:Sros_7988 ABC transporter related protein; SMART: ATPase, AAA+ type, core

DNA sequence : 
ATGACCCAGACCGCCACGGACGGCGCCGGCTCCGCCCTGGTCGCGGCCGGTATCCGGCTGCGCGCCGAGGACGTGAGCCT
CGGCTACGGCGACCGCCTCGTCGTCGACGGGCTCGATCTCGACGTCACCCAGAACACCGTCACGTCCGTGATCGGCCCCA
ACGGCTGCGGCAAGTCGACGCTGCTGCGGGCGCTGGGCCGACTGCTCGTCCCGTCCCGCGGCCACGTGCTGCTCGACGGC
AAGCGGATCGACAAGATGCCCACGAAGGAGGTCGCGACGATCCTCGGGCTGCTGCCGCAGGCGCCCAGCGCCCCCGAGGG
ACTCACGGTCGGTGACCTCGTCTCCCGTGGCCGGCACCCGCACCAGGCGTGGTACCGGCAGTGGTCGGCCGACGACGAGT
CGGCCGTCGCGGAGGCGCTGACCTGGACCAACATGGCCGACCTGGCCGAGCGGCCCGTCGACGAGCTCTCCGGCGGCCAG
CGTCAGCGCGCGTGGATCTCGATGGCGCTGGCGCAGGGCACCGACCTGCTGCTGCTCGACGAGCCGACGACCTACCTGGA
CCTGTCGCACCAGGTCGAGGTGCTGGAGCTGGTGCGCCGGCTCAACCGCGAGGTGGGTCGCACCGTCGTCATGGTGCTGC
ACGACCTGAACCTCGCCGCCCGCTACTCCGACCGGCTCGTCGCCATGCGCGACGGCCGGGTCGTCGCCGCGGGCGAGCCG
GCCGACGTGATCACCGAGCCGCTGCTCGCGGAGGTGTTCGGGCTGCGCGCCAAGGTGATCCCCGATCCCGTCGCCGGCAC
GCCGCTCGTCGTCCCGGTCGGCACGGGAGCCTAG

Protein sequence : 
MTQTATDGAGSALVAAGIRLRAEDVSLGYGDRLVVDGLDLDVTQNTVTSVIGPNGCGKSTLLRALGRLLVPSRGHVLLDG
KRIDKMPTKEVATILGLLPQAPSAPEGLTVGDLVSRGRHPHQAWYRQWSADDESAVAEALTWTNMADLAERPVDELSGGQ
RQRAWISMALAQGTDLLLLDEPTTYLDLSHQVEVLELVRRLNREVGRTVVMVLHDLNLAARYSDRLVAMRDGRVVAAGEP
ADVITEPLLAEVFGLRAKVIPDPVAGTPLVVPVGTGA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 5e-70 65
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 3e-50 50
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-57 49
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 3e-57 49
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 3e-57 49
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-57 49
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 3e-59 48
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 3e-59 48
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 9e-36 45
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-46 44
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-46 42
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-46 42
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-46 42
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-46 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psed_2914 YP_004332967.1 iron-chelate-transporting ATPase BAC0164 Protein 2e-50 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psed_2914 YP_004332967.1 iron-chelate-transporting ATPase VFG0925 Protein 2e-64 53
Psed_2914 YP_004332967.1 iron-chelate-transporting ATPase VFG1042 Protein 2e-50 50