Gene Information

Name : Psed_0247 (Psed_0247)
Accession : YP_004330375.1
Strain : Pseudonocardia dioxanivorans CB1190
Genome accession: NC_015312
Putative virulence/resistance : Virulence
Product : ABC transporter permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0609
EC number : -
Position : 265895 - 266932 bp
Length : 1038 bp
Strand : -
Note : PFAM: ABC transporter permease; KEGG: sro:Sros_7986 ABC transporter, permease, Fe3+-siderophore transport system

DNA sequence : 
GTGGCCCAGACCACCACCGCGTCGGTCGAACGCGGTCGCGGCACCCGTGCCCGCCGGATCGGCATCATCGTCGTACTACT
CGCGCTGCTCGTCGTCGTCGCGGCGGCCGGCCTCCTCCTCGGGTCGCGCTCGCTGCCGCCAGCGGCCGTCTGGTCGGCAC
TGACCGACCCCACCGGCAGCGACCTCGACTTCATCGTCCTGTCGCTGCGGGTGCCCCGGACGATCCTCGGGATCGCCGTG
GGCGTCGCGCTCGGCATCAGCGGCGCACTCATGCAGGGACACACCCGCAACCCGCTCGCCGACCCCGGTCTGCTCGGCGT
CAGTGCGGGTGCGGCCCTGCTCGTCGTGGTCAGCGTCTACGCACTCGGGATCACCAGCCTCTACGGCTACGTCTGGTTCG
CCTTCGTCGGCGCGTTCGGCGCGAGCGTGCTGGTGTTCATGCTCGGCACCCTCAGCCCCGACGGCCCGACACCGGTGACG
CTGGCGCTCGCGGGCGTGGCCGTCAGCGCGTTCCTGGGCGCCATGACGACCGCACTGGTGCTCGGCGACCGCCAGACGCT
CGACGTCTTCCGGTTCTGGTCGGTCGGGGCCCTCGCCGGTCGCGGCGGGGACATCGTCGTGCAGATCGCGCCGTTCCTCG
TCGCCGGGGTCGTCCTGGCGCTGGCCAACGCACCCGGGCTCAACCTGCTCAACCTCGGCGAGGACGTCGCCCGCGGCCTC
GGGGCCAACGTCGGGATGATCCGCGTCATCGGCCTCGTGGCGATCACCCTGCTGGCCGGGGGCGCGACGGCCGCCTGCGG
GCCCATCGGGTTCGTCGGGCTCGTCGTGCCGCACGTCTGCCGGTTCTTCACCGGGCCCGACCACCGCTGGCTCGTCCCGA
CGTCCGGGCTGGCGGGGGCCGTGCTGCTCCTCGGCGCGGACGTCGTCGGCCGCCTCGTCGCCCGGCCGGGAGAGCTGCAG
GTCGGGATCGTGCTCGCGGTCGTCGGCGCGCCGTTCTTCGTGCTGCTGGTGCGCCGTCGGAAGCTGGCGTCGCTGTGA

Protein sequence : 
MAQTTTASVERGRGTRARRIGIIVVLLALLVVVAAAGLLLGSRSLPPAAVWSALTDPTGSDLDFIVLSLRVPRTILGIAV
GVALGISGALMQGHTRNPLADPGLLGVSAGAALLVVVSVYALGITSLYGYVWFAFVGAFGASVLVFMLGTLSPDGPTPVT
LALAGVAVSAFLGAMTTALVLGDRQTLDVFRFWSVGALAGRGGDIVVQIAPFLVAGVVLALANAPGLNLLNLGEDVARGL
GANVGMIRVIGLVAITLLAGGATAACGPIGFVGLVVPHVCRFFTGPDHRWLVPTSGLAGAVLLLGADVVGRLVARPGELQ
VGIVLAVVGAPFFVLLVRRRKLASL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SPN23F_09540 YP_002510937.1 ferric siderophore ABC transporter permease Virulence PPI-1 Protein 6e-22 41
SP_1033 NP_345508.1 iron ABC transporter permease Virulence PPI-1 Protein 5e-22 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psed_0247 YP_004330375.1 ABC transporter permease VFG0926 Protein 8e-17 43