Gene Information

Name : Psed_2189 (Psed_2189)
Accession : YP_004332258.1
Strain : Pseudonocardia dioxanivorans CB1190
Genome accession: NC_015312
Putative virulence/resistance : Unknown
Product : ABC transporter
Function : -
COG functional category : R : General function prediction only
COG ID : COG1123
EC number : -
Position : 2334600 - 2336294 bp
Length : 1695 bp
Strand : +
Note : KEGG: kra:Krad_0942 ABC transporter related; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; SMART: ATPase, AAA+ type, core

DNA sequence :
ATGACCGCCGCACCGCGGATGATCACTCTTGACGCGGAGCTGCTCGGACCGGAGCCCGCCGACGACCGGGTCCTACGGGT
GGACGACCTGACGGTCGGCCTCCGTCCGGTTCCGGGCGACAGCGCGGAACCGATCGTCGACGGGGTGTCGCTGAGGGTGG
CCGCGGGCCGCGCGGTGGGGCTGGTCGGTGAGTCGGGTTCCGGCAAGACGCTGACCGCGCTCGCGGTGGCCGGGCTGCTC
CCGTCCGCGATCCAGGTGGTCGGCGGTCGCATCGAGCTCGCCGATCGCGAGCTGACGGGTCTGGGGGAGCAGGAGGCCAG
GGCTCACCTGGCCGCCTCCGTGGGGGTGGTCTTTCAGAACCCGACGGCGTCGCTCAACCCGCGGATGCGCATCGCCGCGC
AGCTACGGGAGGCGCTTCCCGCCGGGACGAGCCGCCGCCGGGCCAGGGAACGGTCGGGTGAGCTGCTGACCGCGGTGGGC
ATCGCGGACGTCCACAAGACCCTCGGCGCGTTCCCGCACGAGCTGTCCGGCGGGCTCAACCAGCGCGTCGTGATCGCCAT
GGCGCTGGCGCGCGACCCGAAGCTGCTCATCGCCGACGAACCCACGACGGCCCTCGACGTGTCCGTGCAGGCCCAGGTCC
TGGACCTCATCGACGAGCTGCGCGAACGGCTCGGTCTCGGTGTGCTGCTGGTGAGCCACGACATCGGCGTCGTCTCAGAC
CGCACCGACCACGTCTACGTGATGTCGGACGGCCGGATCGTCGAGTCCGGGCCGACCACGCAGGTGCTGGGCGACCCGCA
CCACGCCTACACCCGGCAGCTGCTCGCCGCGACGCCGAGCAGGCTCGAACCCGTCCGGGTCGCAGAACGCCTGCTCCCCG
TCGCGGAGCCGGCGTCGCCCGTGGCCGACCAGTTGGAGGTCCGCGACGTCCGGCGCGCGTTCACGGTGCGCGGCAGCGCT
GGCCGGGCCCGTCACGTCGCCCTCGACGGGGTCGACCTGACCGTCACGAAGGGTCAGGCGATCGGGCTGGTCGGAGAGTC
CGGGTCGGGCAAGACCACGCTCGCGCGGATCATCGTGGGTCTGGAACGGGTCGACTCCGGCGTCGTGTTCTACGAGGGCA
ACCCGGTCGCGCGGCACACCCGCGCGCAGCGCAGGCAGTGGCGCCGCGAGGTGCAGTACGTCTTCCAGGACCCGTACAGC
TCGCTCGACCCCAGGCTGACCGTCGCCCAGACCTTGCGGGAGCCGCTGGAGATCAACTTCCCGGGGCTGTCCCGCGGGGA
GGTCGCGGCCCGGATCGACTCCCTGCTCGACGAGGTGGAGCTGCCCCGGAGCTTCCGCGACCGGCATCCCTCCGAGCTGT
CGGGCGGGCAACGGCAGCGGGTCGGCATCGCACGCGCACTGGCGACCGAACCGTCGGTGATCATCGCCGACGAGCCGGTC
TCCGCACTCGACCTGTCCGTGCAGGCCCGCATCCTCCGGCTCCTCGCGCGGCTGCGGATCGAACGCGACCTCACCTACCT
GTTCATCTCCCATGACCTCGCCGTAGTCCGCTACCTGTGCGAGGACCTCGTCGTGCTGCGCGAGGGATCCGTCGTCGAAC
GGGGCCGCACCGACGACGTTCTGGAACGACCCGAGAGCCCCTACACGCGGGCGCTCGTCGACGCGATCCCCGGCCGCGGC
TTCGCACGATCGTGA

Protein sequence :
MTAAPRMITLDAELLGPEPADDRVLRVDDLTVGLRPVPGDSAEPIVDGVSLRVAAGRAVGLVGESGSGKTLTALAVAGLL
PSAIQVVGGRIELADRELTGLGEQEARAHLAASVGVVFQNPTASLNPRMRIAAQLREALPAGTSRRRARERSGELLTAVG
IADVHKTLGAFPHELSGGLNQRVVIAMALARDPKLLIADEPTTALDVSVQAQVLDLIDELRERLGLGVLLVSHDIGVVSD
RTDHVYVMSDGRIVESGPTTQVLGDPHHAYTRQLLAATPSRLEPVRVAERLLPVAEPASPVADQLEVRDVRRAFTVRGSA
GRARHVALDGVDLTVTKGQAIGLVGESGSGKTTLARIIVGLERVDSGVVFYEGNPVARHTRAQRRQWRREVQYVFQDPYS
SLDPRLTVAQTLREPLEINFPGLSRGEVAARIDSLLDEVELPRSFRDRHPSELSGGQRQRVGIARALATEPSVIIADEPV
SALDLSVQARILRLLARLRIERDLTYLFISHDLAVVRYLCEDLVVLREGSVVERGRTDDVLERPESPYTRALVDAIPGRG
FARS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
dppD YP_005160017.1 putative peptide ABC transport system ATP-binding protein Not tested Not named Protein 4e-86 43
oppDF2 YP_005681814.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 4e-72 42
oppDF2 YP_005683914.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 4e-72 42
cpfrc_01561 YP_003783961.1 hypothetical protein Not tested PiCp 6 Protein 4e-72 42
oppDF2 YP_005686002.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 4e-72 42