Gene Information

Name : Psed_2163 (Psed_2163)
Accession : YP_004332239.1
Strain : Pseudonocardia dioxanivorans CB1190
Genome accession: NC_015312
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : S : Function unknown
COG ID : COG5426
EC number : -
Position : 2308993 - 2309775 bp
Length : 783 bp
Strand : +
Note : PFAM: Domain of unknown function DUF1355; KEGG: cdl:CDR20291_0307 hypothetical protein

DNA sequence : 
GTGCCCGACATCCTGAGTTTCCCGCCGTTGCGCGTTCTGGTCGCGGGTGAGTCCTGGATCAAGCACACGATCCATATGAA
GGGCTTCGATCAGTTCCACTCCACCGAGTATGAGGAGGGCGCCGGTGTCTTCCTGGACTGTGTGCGGGCGGCGGGTCATG
AGTTGACGTATGTGCGGGGACACGAGATCAGTGCGTTGTTCCCGAAGACGGCGGAGGCGCTCGACGCGTTCGACGTGGTT
GTGATCTCTGATATCGGGTCGAACTCGTTCCTGTTGCCGGACGAGACGTTCCTGCGTTCGGAGAAGTCTCCGAACAAGCT
CTCGCTGGTGGCGGATTATGTGGGCCGTGGTGGTGGGCTGGTGATGGTCGGGGGGTACCTGTCGTTCACCGGGATCGACG
GGAAGGCGCGTTATGGGATGAGCCCGTTGGCGGAGGTGTTGCCGGTGGGCTTGATGGCCACCGACGACCGGGTTGAGGTT
TCTGACGGGTTGAAGGTGGACGTGTGCGATCCGGCTCACCCGGTGTTGGGCGGCACGCCGGCGGAGTGGCCGATGTTGCT
GGGCTACAACCGGACGTTCCCGAAGGAGGGTTCCACTGTGGTGGCGCGGGCTGGTGATGACCCGTTGCTGGTGGTGGGGG
AGTACGGCCGGGGTCGGTCTGTGGCTTTCGCCTCGGACCTTGCTCCGCACTGGGCTCCGCCGGAGTTCGTGGAGTGGGAG
CACTATGCGGTTCTGTGGACGTCGATACTGTCCTGGGCCGCGGGTGGTTCCCGAGGTCAGTGA

Protein sequence : 
MPDILSFPPLRVLVAGESWIKHTIHMKGFDQFHSTEYEEGAGVFLDCVRAAGHELTYVRGHEISALFPKTAEALDAFDVV
VISDIGSNSFLLPDETFLRSEKSPNKLSLVADYVGRGGGLVMVGGYLSFTGIDGKARYGMSPLAEVLPVGLMATDDRVEV
SDGLKVDVCDPAHPVLGGTPAEWPMLLGYNRTFPKEGSTVVARAGDDPLLVVGEYGRGRSVAFASDLAPHWAPPEFVEWE
HYAVLWTSILSWAAGGSRGQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY1741 NP_456145.1 Orf 245 protein Not tested SPI-2 Protein 4e-55 51
t1249 NP_805053.1 hypothetical protein Not tested SPI-2 Protein 4e-55 51
SC1402 YP_216389.1 hypothetical protein Not tested SPI-2 Protein 4e-55 51
orf245 NP_460346.1 hypothetical protein Not tested SPI-2 Protein 4e-55 51
ORF 245 CAB37418.1 - Not tested SPI-2 Protein 3e-55 51
APECO1_1077 YP_853097.1 hypothetical protein Not tested PAI IV APEC-O1 Protein 5e-52 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psed_2163 YP_004332239.1 hypothetical protein VFG0482 Protein 2e-55 51