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Name : clpC (HMPREF9137_2409) Accession : YP_004330050.1 Strain : Prevotella denticola F0289 Genome accession: NC_015311 Putative virulence/resistance : Virulence Product : negative regulator of genetic competence ClpC/MecB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 2817451 - 2820024 bp Length : 2574 bp Strand : + Note : identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 DNA sequence : ATGATGAATCAATTTTCCCCAAAGGTTTCGGAAATTCTTTCATTCAGCAGAGAGGAGGCGGAGCGGCTGACAAGCAGGTC AGTGACTCCCGAGCATATCATGCTTGCCCTCTTGAGAGAGAAAACGGGACCTGTATGGGAACTGTTCAACCAATGGAAAG TAGATATTGACAGTCTTAAGAAAGAGATAGAAAAGAAAATACGGGAACAGACTACAGACACTGCTGTGCCTGTACCCGAT ATGCTGTTGAACGAACAGGCCAATAACATCTTGAAATTGGCTGTGCTGGAGGCTCGGCTGCAGCATGCCCAGACGGTAGA CACCCCCCATCTCCTCCTTGCCATCCTGCACGATTCGTCGGACAATGGAGCGAAAAAGGTACTGGAAGACAGTGGAATCA ATTACAACAACACTGTTTCCATGTTACAGCAATGCACGAGCCAGACAAAGAACGGCATCGGCATGGCAGACGAAGACGAA ATGGATGAGGACATGGTTTCTTCATCGCCTTCGTCCGGAAGCGGGAGTACCATGACGACACAGGCTTCCCGTACAAAGTC CAAGACCCCGGTAATCGACAGTTTCGGCACCGATTTGACCGTGGCTGCTGCTGAAGGCAAACTTGATCCGGTCGTAGGCA GAGAAAAGGAAATCATGCGTGTCTGCGAAATTCTTGGCCGCAGGAAGAAGAACAACCCTATTCTGATCGGTGAACCAGGG GTCGGGAAGAGTGCAATTGTGGAGGGGCTGGCTCAGCTTATCGTAAAGCATCTCACCTCTCCTATCCTCTTCGACAAGCG CGTTATTACACTTGACCTGACGGCAGTTGTCGCCGGAACGAAATACCGCGGACAGTTTGAAGAGCGTATCCGTGCATTGA TCAAAGAGATAGAGCAGAATCCTGACATTATCATCTTCATCGATGAAATCCATACATTGATCGGTGCCGGGTCCTCTCCG GGGTCAATGGATGCTGCCAACATCCTCAAACCAGCTTTGGCAAGGGGGACAATACAGTGTATCGGTGCTACGACTCTGGA CGAATACCGCAATTCCATAGAGAAGGACGGGGCTTTGGAACGCCGGTTCCAAAAGGTGCAGGTCGAACCGACGACAGTTG ACAAGACCCTCCAGATTCTCGAGAATATAAAGGACCGCTATGAAGCCCACCATCATGTTGTCTACACAGATGATGCGCTG AAAGCCTGTGTAAAGTATGCTGACAGATACATCACAGACAGGTTCTTTCCCGATAAGGCAATCGATATAATCGACGAAGC AGGTTCACGTGTACATTTGCAGCATGTGAAGATTCCACAGGCAATTCTGGATATTCAGAAGGAGATTGAGACGACGCAGG AGAAGAAGCAGGCTGCGGTGAAGAACCAGAACTTTGAACTGGCCGCCAGCTTCCGTGACAGACAGACGGAGCTTGAGCAG ACCCTGAAGAATGAACAGGAGAAATGGCAGAAAGGAGATGCTGACGAAAAGGTTGAAATCAGTGAGGAGGACATTGCCGG TGTTGTCTCCATGATGACAGGTGTCCCGGTACAGCGTATGCAGGAAGCAGAGGGAGTCCGCTTGAAGAACATGGATGCCG AGCTGAAGAGGGTTGTCATTGCCCAGGATGCTGCCATTGACAAGATGGTGAAAGCCATCCAGCGTAACCGTGTGGGATTG AAAGACCCTAACCACCCGATCGGCGCTTTCATGTTTCTGGGTCCTACTGGTGTCGGAAAGACTTATCTTGCCAAACGACT GGCTGAAATGATGTTCGGTTCTTCGGATGCCCTGATCCGCATAGATATGAGTGAGTATACCGAGAGTTTCAACACTTCCC GTCTTGTCGGAGCACCTCCGGGCTATGTCGGCTATGAAGAAGGCGGACAGCTGACGGAGAAAGTACGTCACCATCCCTAC TCCATTGTTCTGCTGGACGAAATAGAGAAAGCACACGGCAATGTATTCAATATGCTTCTGCAGGTTCTTGATGAAGGCAG ACTGACAGATGGAAACGGCCGGCTGATAGATTTCCGCAATACGGTCATCATCATGACCTCAAATGCCGGAACACGACAGT TGAAGGAGTTCGGACAGGGTATCGGCTTCAAGGCAACAGGCCTGAACGGTCTTTCGCAGAGTGAAGGCGACAAGCAGCGT GCTCGTTCCATCATCCAGAAGAGCCTGAGCAAACAGTTTGCTCCCGAGTTTCTGAATCGTCTGGACGAAATCGTCACTTT CGATCAATTGGATCTCGACGCGATAAAGAAAATTATCAACATTGAGCTGAAAGGCCTGTTCAGACGTGTGCATGAACTGG GCTATAAGATGGAGATAACAGATGAGGCCAAAGAGTTTGTAGCGATCAAGGGATACGATGTCCAGTTCGGTGCCCGGCCG TTGAAGCGAGCCATCCAGAACTATATCGAGGATGGATTATGTGAGCTGATTCTCTCGGGCAACATCAAGACCGCCGACAC CATCGTCATATCCAAAGAGAAAGACCGTAACAGGCTGACGTTTGACACTGTCTCGCAATCTGAAGAACAAGGCCTTCATC ATATTGCAGAGTAA Protein sequence : MMNQFSPKVSEILSFSREEAERLTSRSVTPEHIMLALLREKTGPVWELFNQWKVDIDSLKKEIEKKIREQTTDTAVPVPD MLLNEQANNILKLAVLEARLQHAQTVDTPHLLLAILHDSSDNGAKKVLEDSGINYNNTVSMLQQCTSQTKNGIGMADEDE MDEDMVSSSPSSGSGSTMTTQASRTKSKTPVIDSFGTDLTVAAAEGKLDPVVGREKEIMRVCEILGRRKKNNPILIGEPG VGKSAIVEGLAQLIVKHLTSPILFDKRVITLDLTAVVAGTKYRGQFEERIRALIKEIEQNPDIIIFIDEIHTLIGAGSSP GSMDAANILKPALARGTIQCIGATTLDEYRNSIEKDGALERRFQKVQVEPTTVDKTLQILENIKDRYEAHHHVVYTDDAL KACVKYADRYITDRFFPDKAIDIIDEAGSRVHLQHVKIPQAILDIQKEIETTQEKKQAAVKNQNFELAASFRDRQTELEQ TLKNEQEKWQKGDADEKVEISEEDIAGVVSMMTGVPVQRMQEAEGVRLKNMDAELKRVVIAQDAAIDKMVKAIQRNRVGL KDPNHPIGAFMFLGPTGVGKTYLAKRLAEMMFGSSDALIRIDMSEYTESFNTSRLVGAPPGYVGYEEGGQLTEKVRHHPY SIVLLDEIEKAHGNVFNMLLQVLDEGRLTDGNGRLIDFRNTVIIMTSNAGTRQLKEFGQGIGFKATGLNGLSQSEGDKQR ARSIIQKSLSKQFAPEFLNRLDEIVTFDQLDLDAIKKIINIELKGLFRRVHELGYKMEITDEAKEFVAIKGYDVQFGARP LKRAIQNYIEDGLCELILSGNIKTADTIVISKEKDRNRLTFDTVSQSEEQGLHHIAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 4e-173 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_004330050.1 | negative regulator of genetic competence ClpC/MecB | VFG0080 | Protein | 2e-146 | 49 |
| clpC | YP_004330050.1 | negative regulator of genetic competence ClpC/MecB | VFG0079 | Protein | 0.0 | 48 |
