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Name : lysS (HMPREF9137_1700) Accession : YP_004329375.1 Strain : Prevotella denticola F0289 Genome accession: NC_015311 Putative virulence/resistance : Virulence Product : lysine--tRNA ligase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 1952807 - 1954543 bp Length : 1737 bp Strand : - Note : identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499 DNA sequence : ATGAACGTTTTAGAATTATCTGAGCAGGAAATCGGCCGTCGCCAGAGCCTGCAGGAATTGCGTGCGATGGGCATCAATCC CTATCCGGCAGCAGAGTTCCCCACCAATGCTTACTCTACTGACATCAAGGCGCAGTTTAAGGAGGGCGAGCAGCGTGAGG TCGTCATCGCCGGCCGTATGATGGGGCGCCGTGTCATGGGCAAGGCCTCCTTCGCAGAGATACAGGACAGCAAGGGCAGA ATCCAGGTTTACATCACTCGTGACGACATTTGTCCGGGTGAGGATAAAGACTTATATAACAAGGTGTTCAAGAAGCTGCT CGACATCGGCGACTTCATCGGTATCAAGGGTTTCGTCTTCAAGACACAGATGGGCGAGATTTCTGTTCATGCCAAGGAAA TCACGCTGCTGTCGAAGAGTCTGAAGCCGCTGCCGGTCGTCAAGTACAAGGACGGCGAGGCATACGACAAGTTTGAAGAT CCCGAGCAGCGTTACCGCCAGCGTTATGTAGATCTCGTCGTAAACGACGGCGTGAAGGATACTTTCCTCAAGCGCGCCAC CGTCCTGCGCACGATGCGCCGCTTCTTCGACGAGGCGGGATATACGGAGGTGGAGACACCGACGTTGCAGAGCATTCCCG GCGGTGCGAGCGCTCGTCCGTTCATCACCCATTTCAATGCGCTCAACATCGATATGTATATGCGTATCGCCACGGAGCTT TACCTGAAGCGGCTGATTGTCGGAGGATTTGAAGGTGTCTATGAAATCGGAAAGAACTTCCGCAACGAGGGTATGGACCG CTTCCACAACCCGGAGTTCACCTGCATGGAACTTTATGTGCAGTACAAGGACTACAACTGGATGATGTCGTTCACCGAGC AGCTGCTGGAGAAGATTTGCACGGAAGTGAACGGAAAACCGGAGGTGCAGATGGGTGACAAGACCATCAGTTTCAAGGCT CCTTTCCGCCGGCTGCCTATCCTCGACGCCATCAAGGAGAAGACGGGCTTCGATCTCGCCGGCAAGTCAGAGGAGGAAAT CCGCCATATCGCCGTGGACGAACTGAAGCTGGAAGGCATTGACGAGAGCTTCGGCAAGGGGAAACTGATTGACGAAATCT TCGGCGAGTTCTGTGAGGGGACGTTCATCCAGCCGACCTTCATCACCGATTATCCTGTCGAGATGTCGCCGCTGACGAAG ATGCACCGCTCCAAGCCGGGGCTGACAGAGCGTTTCGAGCTGATGGTAAACGGCAAGGAACTGGCGAATGCTTATTCCGA GCTGAACGACCCGATCGATCAGGAAGAGCGTTTCCTCGACCAGATGCACCTGGCCGACAAGGGAGACGACGAGGCGATGA TCATCGACCAGGATTTCCTCCGTGCGCTGCAGTATGGTATGCCGCCGACCTCTGGTATCGGCATCGGTATCGACCGTCTG GTAATGCTGATGACCGGTAAGGAGTACATCCAGGAGGTATTGCTCTTCCCGCAGATGAAGCCGGAACCGAAGATTCCGCA GTCATCTGTCAAGGAATGGGCAGAGCTTGGCGTGGCAGAATCCTGGGTGTATGTGCTGCGCAAGGCCGGCTTCAACCTCA TCTCCGACATCAAGGACGAGAAGGCACAGGGTCTGCAACAGAAACTCGGTGAAATCAACAAGAAGTACAAGCTCGGGTAC GAGAAGCCTTCTGTTGACGAGATTCAGCAGTGGATTGAAAGAGCAAAAGAAAAGTAA Protein sequence : MNVLELSEQEIGRRQSLQELRAMGINPYPAAEFPTNAYSTDIKAQFKEGEQREVVIAGRMMGRRVMGKASFAEIQDSKGR IQVYITRDDICPGEDKDLYNKVFKKLLDIGDFIGIKGFVFKTQMGEISVHAKEITLLSKSLKPLPVVKYKDGEAYDKFED PEQRYRQRYVDLVVNDGVKDTFLKRATVLRTMRRFFDEAGYTEVETPTLQSIPGGASARPFITHFNALNIDMYMRIATEL YLKRLIVGGFEGVYEIGKNFRNEGMDRFHNPEFTCMELYVQYKDYNWMMSFTEQLLEKICTEVNGKPEVQMGDKTISFKA PFRRLPILDAIKEKTGFDLAGKSEEEIRHIAVDELKLEGIDESFGKGKLIDEIFGEFCEGTFIQPTFITDYPVEMSPLTK MHRSKPGLTERFELMVNGKELANAYSELNDPIDQEERFLDQMHLADKGDDEAMIIDQDFLRALQYGMPPTSGIGIGIDRL VMLMTGKEYIQEVLLFPQMKPEPKIPQSSVKEWAELGVAESWVYVLRKAGFNLISDIKDEKAQGLQQKLGEINKKYKLGY EKPSVDEIQQWIERAKEK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 6e-100 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_004329375.1 | lysine--tRNA ligase | VFG1668 | Protein | 3e-100 | 46 |
