Gene Information

Name : HMPREF9137_1465 (HMPREF9137_1465)
Accession : YP_004329150.1
Strain : Prevotella denticola F0289
Genome accession: NC_015311
Putative virulence/resistance : Virulence
Product : nucleotide sugar dehydrogenase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1004
EC number : -
Position : 1706180 - 1707439 bp
Length : 1260 bp
Strand : -
Note : identified by match to protein family HMM PF00984; match to protein family HMM PF01210; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026

DNA sequence :
ATGGATAAGGACTTAAAAGACTTGAGAATTGCTGTTGCTGGGACCGGCTATGTCGGTCTCAGCATTGCCACGTTATTAAG
CCAGCACCATCGGGTAGTGGCTGTTGACGTGATAAAGGAAAAGGTCGACCTGATCAACAACCGCCGCTCACCAATCCAAG
ACGACTATATCGAACAGTATCTGGCCGAAAAGGAACTGAACCTCACGGCGACGTTGGACGCTGAGGCGGCCTACAGGAAT
GCCGACTTCGTCGTCATTGCCACACCGACGAACTATGACCCGGTAAAGAACTACTTTGACACACGTCATGTCGAGGAGGT
CATTGAGGTGGTAATGAAGGTGAATCCAGATGCTGTCATGGTGATCAAGTCGACAATCCCTGTAGGCTATACGGAGAACA
TCCGGGCTAAATATAAATGCGACAACATCCTCTTTGCACCAGAGTTTTTGCGTGAGAGCAAAGCACTCTACGACAACCTT
TACCCCAGCCGTATCATCGTTGGCCGTCCGGACGGCGACGAGCGACTCGACCGTGCGGCGCATCTCTTTGCCCGATTGTT
ACAAGAAGGGGCCATCAGACAGGACATCCCTACCCTCTTCATGGGACTTACCGAAGCAGAAGCTGTAAAGCTCTTTGCTA
ATACCTACCTGGCCTTGCGTGTAAGTTACTTCAACGAACTGGATACATACGCCGAAGTGAAAGGACTTGACACTTCGAAT
ATCATCCAAGGTGTCTGCCTTGATCCACGTATCGGATCTTTCTATAACAACCCATCATTTGGCTATGGCGGATATTGCCT
GCCGAAAGATACGAAGCAGCTGCTTGCCAATTATGCGGATGTCCCCGAGAATCTTATTCAGGCGATTGTGGAAAGCAACC
GCACACGCAAGGATTTCATTGCCGACCAGGTGCTGCACACAGCCGGTTATTATGATTATTACGACCGCGGCGACTATAAC
CCCGACGAGGAAAAGGAATGTATCATAGGAGTCTACCGCCTGACAATGAAGTCGAACAGTGACAACTTCCGCCAGAGTTC
TATTCAAGGAGTGATGAAGCGTATCAAGGCCAAGGGAGCACAGGTCATCATCTATGAGCCGACACTGGAAGACGGTGCCA
CTTTCTTTGGCAGCCTTGTCGTCAACGACCTTCCTGCCTTCAAGCAGCGTTGCCATGCCATCATCGCCAACCGCTACGAT
AAATGTCTTGACGATGTAAAAGAGAAAGTATATACAAGAGATATATTCAGACGGGATTAA

Protein sequence :
MDKDLKDLRIAVAGTGYVGLSIATLLSQHHRVVAVDVIKEKVDLINNRRSPIQDDYIEQYLAEKELNLTATLDAEAAYRN
ADFVVIATPTNYDPVKNYFDTRHVEEVIEVVMKVNPDAVMVIKSTIPVGYTENIRAKYKCDNILFAPEFLRESKALYDNL
YPSRIIVGRPDGDERLDRAAHLFARLLQEGAIRQDIPTLFMGLTEAEAVKLFANTYLALRVSYFNELDTYAEVKGLDTSN
IIQGVCLDPRIGSFYNNPSFGYGGYCLPKDTKQLLANYADVPENLIQAIVESNRTRKDFIADQVLHTAGYYDYYDRGDYN
PDEEKECIIGVYRLTMKSNSDNFRQSSIQGVMKRIKAKGAQVIIYEPTLEDGATFFGSLVVNDLPAFKQRCHAIIANRYD
KCLDDVKEKVYTRDIFRRD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0068 YP_300158.1 UDP-glucose 6-dehydrogenase Not tested SCC15305cap Protein 6e-80 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF9137_1465 YP_004329150.1 nucleotide sugar dehydrogenase VFG0963 Protein 4e-106 57